BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0012.p         (82 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0554 [C] COG0045 Succinyl-CoA synthetase, beta subunit Rso Ra...   136   2e-32
SMc02480 [C] COG0045 Succinyl-CoA synthetase, beta subunit Sme S...   111   3e-25
mll4306 [C] COG0045 Succinyl-CoA synthetase, beta subunit Mlo Me...   111   4e-25
BMEI0138 [C] COG0045 Succinyl-CoA synthetase, beta subunit Bme B...   111   5e-25
CC0337 [C] COG0045 Succinyl-CoA synthetase, beta subunit Ccr Cau...   106   1e-23

>RSc0554 [C] COG0045 Succinyl-CoA synthetase, beta subunit Rso Ralstonia
           solanacearum
          Length = 388

 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/72 (93%), Positives = 70/72 (97%)

Query: 1   MLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKLLADS 60
           MLKNP LKAILVNIFGGIMRCDVIAEGVIAASKAVSL VPLVVRMKGTNEDLGKK+LADS
Sbjct: 305 MLKNPGLKAILVNIFGGIMRCDVIAEGVIAASKAVSLSVPLVVRMKGTNEDLGKKMLADS 364

Query: 61  GLPIISADSMEE 72
           GLPII+AD+MEE
Sbjct: 365 GLPIIAADTMEE 376


>SMc02480 [C] COG0045 Succinyl-CoA synthetase, beta subunit Sme Sinorhizobium
           meliloti
          Length = 398

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 69/79 (87%)

Query: 4   NPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKLLADSGLP 63
           +P +K ILVNIFGGIM+CDVIAEGV+AA K V LKVPLVVR++GTN +LGKK++ +SGL 
Sbjct: 318 DPAVKGILVNIFGGIMKCDVIAEGVLAAVKEVGLKVPLVVRLEGTNVELGKKIINESGLN 377

Query: 64  IISADSMEEAAQKVVAAAK 82
           +ISAD +++AAQK+VAA K
Sbjct: 378 VISADDLDDAAQKIVAAVK 396


>mll4306 [C] COG0045 Succinyl-CoA synthetase, beta subunit Mlo Mesorhizobium
           loti
          Length = 397

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 71/82 (86%)

Query: 1   MLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKLLADS 60
           + K+P +K IL+NIFGGIM+CD+IAEGVIAA K V L+VPLVVR++GTN +LGKK++ DS
Sbjct: 315 ITKDPAVKGILINIFGGIMKCDIIAEGVIAAVKEVGLEVPLVVRLEGTNAELGKKIINDS 374

Query: 61  GLPIISADSMEEAAQKVVAAAK 82
           GL ++SAD +++AA+K+VAA K
Sbjct: 375 GLNVVSADDLDDAAKKIVAAVK 396


>BMEI0138 [C] COG0045 Succinyl-CoA synthetase, beta subunit Bme Brucella
           melitensis
          Length = 398

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 69/79 (87%)

Query: 4   NPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKLLADSGLP 63
           +P ++ ILVNIFGGIM+CDVIAEGVIAA K V LKVPLVVR++GTN +LGKK++ +SGL 
Sbjct: 318 DPAVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLKVPLVVRLEGTNVELGKKIINESGLN 377

Query: 64  IISADSMEEAAQKVVAAAK 82
           +ISAD +++AAQK+VAA K
Sbjct: 378 VISADDLDDAAQKIVAAVK 396


>CC0337 [C] COG0045 Succinyl-CoA synthetase, beta subunit Ccr Caulobacter
           vibrioides
          Length = 399

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 68/79 (86%)

Query: 4   NPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKLLADSGLP 63
           +P +K ILVNIFGGIMRCD+IAEGVIAA K V L+VPLVVR++GTN +LGKK++++SGL 
Sbjct: 318 DPAVKGILVNIFGGIMRCDIIAEGVIAAVKEVGLQVPLVVRLEGTNVELGKKIISESGLN 377

Query: 64  IISADSMEEAAQKVVAAAK 82
           +I+A+ + + A+K+VAA K
Sbjct: 378 VIAANDLSDGAEKIVAAVK 396