BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0008.p         (309 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1651_1 [T] COG0784 FOG Vch Vibrio cholerae                           88   2e-17
YPO1680 [T] COG0784 FOG Ype Yersinia pestis                            76   1e-13
RSc0741 [T] COG0784 FOG Rso Ralstonia solanacearum                     75   3e-13
cheY [T] COG0784 FOG Eco Escherichia coli K12                          75   3e-13
ZcheY [T] COG0784 FOG EcZ Escherichia coli O157:H7 EDL933              75   3e-13

>VC1651_1 [T] COG0784 FOG Vch Vibrio cholerae
          Length = 168

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 2/154 (1%)

Query: 6   ISALRSLIIDDMPTMRQNIRMHLGQLGVTK--VDQAATPDEAIRFVQSGNYDLIICDYNL 63
            + L+ LIIDD P +  ++R  L +LG T+  +  + +P  A+       +D+ ICDYN 
Sbjct: 6   FAELKVLIIDDAPIVIASLRSMLLKLGFTEPNIVWSKSPRAAVFMAGRQRFDIFICDYNF 65

Query: 64  NKESNGQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLTASRIAE 123
            K  NG+Q+ E  +   ++    +F++VT E+   +V S  E +PD Y+LKP     + E
Sbjct: 66  GKGLNGKQVFEELKHYKLIKQDAVFVLVTGENSAYVVHSILELKPDEYILKPFNIMTLQE 125

Query: 124 RVDRLLEKQHAMLPVTEKMKRKDISGAIAECDNV 157
           R+   + ++HA+  + +  +  D    ++ CD +
Sbjct: 126 RLTNAISRKHALKALYQAERDGDAELGLSLCDEL 159


>YPO1680 [T] COG0784 FOG Ype Yersinia pestis
          Length = 129

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 75/123 (60%), Gaps = 2/123 (1%)

Query: 9   LRSLIIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSGNYDLIICDYNLNKESN 68
           LR L++DD  TMR+ +R  L +LG   V++A    +A+  +++G +D ++ D+N+    +
Sbjct: 6   LRFLVVDDFSTMRRIVRNLLKELGFHNVEEAEDGVDALNKLRAGGFDFVVSDWNM-PNMD 64

Query: 69  GQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLTASRIAERVDRL 128
           G  LL+  RT   L+ T   +MVTAE+    + +AA+     Y++KP TA+ + E+++++
Sbjct: 65  GLDLLKTIRTDGALA-TLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123

Query: 129 LEK 131
            EK
Sbjct: 124 FEK 126


>RSc0741 [T] COG0784 FOG Rso Ralstonia solanacearum
          Length = 134

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 2/126 (1%)

Query: 7   SALRSLIIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSGNYDLIICDYNLNKE 66
           S  R L++DD PTMR+ IR  L +LG   +D+A      +  ++   +D +I D+N+ K 
Sbjct: 4   SQYRFLVVDDFPTMRRIIRGQLKELGFANIDEAEDGTAGLSKIKESRFDFVISDWNMPK- 62

Query: 67  SNGQQLLEFFRTQ-NMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLTASRIAERV 125
            +G Q+L+  R   N        ++VTAE+    V +AA+     Y++KP TA+ + E++
Sbjct: 63  MDGLQMLQAIRADPNPGISKLPVLIVTAEAKKENVIAAAQAGASGYVVKPFTAATLGEKL 122

Query: 126 DRLLEK 131
           +++ EK
Sbjct: 123 NKIFEK 128


>cheY [T] COG0784 FOG Eco Escherichia coli K12
          Length = 129

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 74/123 (60%), Gaps = 2/123 (1%)

Query: 9   LRSLIIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSGNYDLIICDYNLNKESN 68
           L+ L++DD  TMR+ +R  L +LG   V++A    +A+  +Q+G Y  +I D+N+    +
Sbjct: 6   LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNM-PNMD 64

Query: 69  GQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLTASRIAERVDRL 128
           G +LL+  R    +S   + +MVTAE+    + +AA+     Y++KP TA+ + E+++++
Sbjct: 65  GLELLKTIRADGAMSALPV-LMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123

Query: 129 LEK 131
            EK
Sbjct: 124 FEK 126


>ZcheY [T] COG0784 FOG EcZ Escherichia coli O157:H7 EDL933
          Length = 129

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 74/123 (60%), Gaps = 2/123 (1%)

Query: 9   LRSLIIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSGNYDLIICDYNLNKESN 68
           L+ L++DD  TMR+ +R  L +LG   V++A    +A+  +Q+G Y  +I D+N+    +
Sbjct: 6   LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNM-PNMD 64

Query: 69  GQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLTASRIAERVDRL 128
           G +LL+  R    +S   + +MVTAE+    + +AA+     Y++KP TA+ + E+++++
Sbjct: 65  GLELLKTIRADGAMSALPV-LMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123

Query: 129 LEK 131
            EK
Sbjct: 124 FEK 126