BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0005.p (328 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 407 e-113 PA3445 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 127 4e-29 BS_ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 123 6e-28 ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transpor... 123 7e-28 ZycbO [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transpo... 122 2e-27 >PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Pae Pseudomonas aeruginosa Length = 333 Score = 407 bits (1046), Expect = e-113, Method: Compositional matrix adjust. Identities = 193/292 (66%), Positives = 237/292 (81%) Query: 35 IRLDYAYYSPPSLVLRKFGWLEEDLKAQGTEVKWVLSQGSNRALEYLNSDSVDFGSTAGL 94 IRLDYAYY+P SL LRKFGWLE+ L GT V+WV SQGSNR+LEYLN+ SVDF STAGL Sbjct: 32 IRLDYAYYAPTSLALRKFGWLEKSLDGSGTRVRWVFSQGSNRSLEYLNAGSVDFASTAGL 91 Query: 95 AALLARANGNPVKAVYIYSRPEWTALAVGKESPVKSISELKGKKIAATKGTDPYLFLLRA 154 AA+LARANG+PV+ VY+ SRPEWTAL V K+SP++S++ELKG+K+AATKGTDPYLFLLR+ Sbjct: 92 AAVLARANGSPVRTVYVASRPEWTALLVRKDSPIRSLAELKGRKVAATKGTDPYLFLLRS 151 Query: 155 LHENGLKKSDVEIVHLQHADGRAALEQGRVAAWAGLDPHLAASELEAGSRLIYRNVNFNT 214 LH GL K+D+ IVHLQH DGR ALE+G+V AWAGLDPH+AASEL+AGSRL+YRN+ FN+ Sbjct: 152 LHSVGLDKNDLRIVHLQHPDGRVALEKGQVDAWAGLDPHMAASELQAGSRLLYRNLGFNS 211 Query: 215 YGFLNVSDSFAARHPDQVKRVIAAYERARSWIIAHPDETVALLSEESKLSAPVARLQLKR 274 YG LNV + FA RHP +++V+AAYE+AR W+I HPDE LL+EE+ L VARLQL R Sbjct: 212 YGVLNVREDFAERHPQLIRQVLAAYEQARHWVIGHPDEAAQLLAEEAGLPLEVARLQLSR 271 Query: 275 NDFSQPQIGREHIEALRAAAPILLEEDLVKSGTDLPRTINALIDPSYAQGVV 326 DFSQP G E + AL+AAAPIL +E LV+ G D+ + ++ LI P +A VV Sbjct: 272 TDFSQPLPGAEQVAALKAAAPILADERLVRPGVDVQKVVDELIAPQWAAEVV 323 >PA3445 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Pae Pseudomonas aeruginosa Length = 323 Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 141/273 (51%), Gaps = 5/273 (1%) Query: 34 VIRLDYAYYSPPSLVLRKF-GWLEEDLKAQGTEVKWVLSQGSNRALEYLNSDSVDFGSTA 92 +R+ Y Y +LVL K G LE+ L G +V+W G + LE LN S+DFG T Sbjct: 31 TLRIGYQKYG--TLVLLKARGTLEKRLAEDGVKVQWTEFPGGPQLLEGLNVGSIDFGVTG 88 Query: 93 GLAALLARANGNPVKAV-YIYSRPEWTALAVGKESPVKSISELKGKKIAATKGTDPYLFL 151 + A+A G + V Y P A+ + K+SP++S++ELKG+K+A KG++ + L Sbjct: 89 ETPPVFAQAAGADLLYVAYEPPAPTSEAILLPKDSPIRSVAELKGRKVALNKGSNVHYLL 148 Query: 152 LRALHENGLKKSDVEIVHLQHADGRAALEQGRVAAWAGLDPHLAASELEAGSRLIYRNVN 211 +RAL + GLK SD++ V+L AD RAA E+ V AW DP+ AA+E + +R++ Sbjct: 149 VRALEQAGLKYSDIQPVYLPPADARAAFERHSVDAWVIWDPYQAAAEKQLSARVLVDGRE 208 Query: 212 F-NTYGFLNVSDSFAARHPDQVKRVIAAYERARSWIIAHPDETVALLSEESKLSAPVARL 270 + + F + ++A RHP + +++ W A+P + ++ L A + Sbjct: 209 LVDNHQFYLATRTYAQRHPQVLDKLVDEIREVGDWSRANPQQVTEQVAPLLGLPADITLT 268 Query: 271 QLKRNDFSQPQIGREHIEALRAAAPILLEEDLV 303 +KR + I +EA + A + L+ Sbjct: 269 AVKRQGYGAQLITPAVVEAQQKIADTFTQLKLI 301 >BS_ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Bsu Bacillus subtilis Length = 332 Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 133/285 (46%), Gaps = 3/285 (1%) Query: 33 KVIRLDYAYYSPPSLVLRKFGWLEEDLKAQGTEVKWVLSQGSNRALEYLNSDSVDFGSTA 92 K IR+ P L+ ++ GW E+ + +G +VKWV Q E L +D +DF Sbjct: 31 KEIRIGIQQSLSPLLIAKEKGWFEDAFEKEGIKVKWVEFQSGPPQFEGLAADKLDFSQVG 90 Query: 93 GLAALLARANGNPVKAVYIYSRP-EWTALAVGKESPVKSISELKGKKIAATKGTDPYLFL 151 + +A G K + + + + V + S ++ + LKGKKIA KG+ + FL Sbjct: 91 NSPVIAGQAAGIDFKEIGLSQDGLKANGILVNQNSGIQDVKGLKGKKIAVAKGSSGFDFL 150 Query: 152 LRALHENGLKKSDVEIVHLQHADGRAALEQGRVAAWAGLDPHLAASELEAGSRLIYRNVN 211 +AL + GL +DV I+ LQ + +A E G V AW+ +P+L+ ++ G++++ + Sbjct: 151 YKALDQVGLSANDVTIIQLQPDEAASAFENGSVDAWSIWEPYLSLETMKHGAKILVNGES 210 Query: 212 FNTY--GFLNVSDSFAARHPDQVKRVIAAYERARSWIIAHPDETVALLSEESKLSAPVAR 269 + Y GF V F+ HPD+V R + + +A W H DE L S+ L V Sbjct: 211 TDLYSPGFTLVRTKFSEEHPDEVVRFLKVFNKAVVWQKEHLDEAADLYSDIKDLDKKVVE 270 Query: 270 LQLKRNDFSQPQIGREHIEALRAAAPILLEEDLVKSGTDLPRTIN 314 LK + I + ++A + A + D+ ++ Sbjct: 271 NVLKNTEPLNEIISDDIVKAQQETADFQFRTKAIDKKIDVKDVVD 315 >ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Eco Escherichia coli K12 Length = 333 Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 146/269 (54%), Gaps = 8/269 (2%) Query: 1 MHRRDFLRLAPAALGVTALGGIPLLSSAAQPPKVIRLDYAYYSPPSLVLRKFGWLEEDLK 60 M R+ ++LA A L + + SS P+ +R+ Y S ++ + LE+ + Sbjct: 13 MPMRNIIKLALAGLLSVSTFAVAAESS----PEALRIGYQKGSIGMVLAKSHQLLEK--R 66 Query: 61 AQGTEVKWVLSQGSNRALEYLNSDSVDFGSTAGLAALLARANGNPVKAVYIYS-RPEWTA 119 +++ WV + LE LN S+D GST + + A+A G + V + +P+ Sbjct: 67 YPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEV 126 Query: 120 LAVGKESPVKSISELKGKKIAATKGTDPYLFLLRALHENGLKKSDVEIVHLQHADGRAAL 179 + V + SP+K++++LKG K+A KG+ + LLRAL + GLK +D++ +L AD RAA Sbjct: 127 ILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAF 186 Query: 180 EQGRVAAWAGLDPHLAASELEAGSRLIYRNVNFNTYG-FLNVSDSFAARHPDQVKRVIAA 238 +QG V AWA DP+ +A+ L+ G R++ + N G F + +A ++ ++ V+A Sbjct: 187 QQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLAT 246 Query: 239 YERARSWIIAHPDETVALLSEESKLSAPV 267 + A + + ++++ALL++ L APV Sbjct: 247 FSEADALTRSQREQSIALLAKTMGLPAPV 275 >ZycbO [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components EcZ Escherichia coli O157:H7 EDL933 Length = 333 Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 148/269 (55%), Gaps = 8/269 (2%) Query: 1 MHRRDFLRLAPAALGVTALGGIPLLSSAAQPPKVIRLDYAYYSPPSLVLRKFGWLEEDLK 60 M R+ ++LA +G+ ++ I + +A P+ +R+ Y S +VL K L E Sbjct: 13 MPMRNIIKLA--LVGLLSVSTI--VVAAESSPEALRIGYQKGSI-GMVLAKSHQLLEKRY 67 Query: 61 AQGTEVKWVLSQGSNRALEYLNSDSVDFGSTAGLAALLARANGNPVKAVYIYS-RPEWTA 119 Q +++ WV + LE LN S+D GST + + A+A G + V + +P+ Sbjct: 68 PQ-SKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLLYVGVEPPKPKAEV 126 Query: 120 LAVGKESPVKSISELKGKKIAATKGTDPYLFLLRALHENGLKKSDVEIVHLQHADGRAAL 179 + V + SP+K+ ++LKG K+A KG+ + LLRAL + GLK +D++ +L AD RAA Sbjct: 127 ILVAENSPIKTAADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAF 186 Query: 180 EQGRVAAWAGLDPHLAASELEAGSRLIYRNVNFNTYG-FLNVSDSFAARHPDQVKRVIAA 238 +QG V AWA DP+ +A+ L+ G R++ + N G F + +A ++ ++ V+A Sbjct: 187 QQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLAT 246 Query: 239 YERARSWIIAHPDETVALLSEESKLSAPV 267 + A + + ++++ALL++ L APV Sbjct: 247 FSEADALTRSQREQSIALLAKTMGLPAPV 275