BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0004.p (277 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3448 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 305 7e-83 AGl1398 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 199 8e-51 mll4557 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 196 4e-50 AGpT164 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 192 6e-49 YPO3626 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 192 7e-49 >PA3448 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Pae Pseudomonas aeruginosa Length = 274 Score = 305 bits (781), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 172/261 (65%), Positives = 199/261 (76%), Gaps = 4/261 (1%) Query: 9 RTHRRGWPHDDAYRPGRFTGWIVPLAFLLLVEAGARLELIPARLLPPPSELAHTLWSLAQ 68 R RR W PG + W +PL L EA RL +PA +P PS + TL LA Sbjct: 11 RVSRRAWRLRV---PGAWRAWALPLLALSSWEALVRLGWLPAYQMPAPSGILLTLVELA- 66 Query: 69 RGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIP 128 RGEL H+ ASLARVAAGF IGS LA+ +G VG+SRRAEA LEPSFQALRAIPSLAW+P Sbjct: 67 RGELWGHVGASLARVAAGFAIGSGLALVVGTWVGLSRRAEAYLEPSFQALRAIPSLAWVP 126 Query: 129 LLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILL 188 LLLLW GIDETPK+VLIA+GAFFPVYL LVAG+R +D K +E+G L+ AL+ ILL Sbjct: 127 LLLLWFGIDETPKIVLIALGAFFPVYLALVAGVRGVDRKWVELGRLYRLSRFALVRRILL 186 Query: 189 PASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLAAILILALL 248 PA+LP LF GLRG LSL+WMFLVAAELIAAT+G+GYLLSDGRE+SRPDLV+AAIL+LA L Sbjct: 187 PAALPNLFTGLRGALSLSWMFLVAAELIAATQGLGYLLSDGRETSRPDLVIAAILVLAAL 246 Query: 249 GKLSDGLLRQLETRSLTWRHA 269 GKLSDGLLR LE R+L WR + Sbjct: 247 GKLSDGLLRSLERRALRWRDS 267 >AGl1398 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 260 Score = 199 bits (505), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 106/249 (42%), Positives = 154/249 (61%) Query: 24 GRFTGWIVPLAFLLLVEAGARLELIPARLLPPPSELAHTLWSLAQRGELLPHIAASLARV 83 G TGW++P L E AR+ LI A +LP PS +A W L GEL+ +I S AR Sbjct: 11 GVATGWLLPALILAGWEVAARVGLISANVLPAPSAVAEAFWRLLLSGELIANIGVSSARA 70 Query: 84 AAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVV 143 AGF IG ++ GL G+SR + + + + Q +R IP LA IPL++LW GIDE K+ Sbjct: 71 LAGFAIGGSIGFIFGLANGLSRFSRSFTDTTLQMIRNIPHLALIPLVILWFGIDEEAKLF 130 Query: 144 LIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGL 203 L+A+G FFP+Y+N + GI+ +D +L+E+G T G++ L ++LP +LP +F GLR L Sbjct: 131 LVALGVFFPIYINTLLGIQGVDPQLVEMGRTYGMSPFTLFRRVILPGALPSIFTGLRYAL 190 Query: 204 SLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLAAILILALLGKLSDGLLRQLETRS 263 + W+ L+ AE I+++ G+GY+ RE D+V+ +ILI ALLGKL+D R LE+ Sbjct: 191 GIMWLTLIVAETISSSSGLGYMAMQAREFLLIDVVVLSILIYALLGKLADSFARFLESIF 250 Query: 264 LTWRHARQH 272 L W A + Sbjct: 251 LQWHPAFKK 259 >mll4557 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Mlo Mesorhizobium loti Length = 258 Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 110/245 (44%), Positives = 159/245 (64%) Query: 28 GWIVPLAFLLLVEAGARLELIPARLLPPPSELAHTLWSLAQRGELLPHIAASLARVAAGF 87 GW++P+ + EA +R L+PA +LP PS +A W L GEL+ +I S AR AGF Sbjct: 13 GWVLPVLVIAGWEAASRAGLVPANVLPAPSAVAEAFWRLTLSGELIRNIGVSTARALAGF 72 Query: 88 VIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAI 147 IG ++ ALGL G+SR + L + + Q +R IP LA IPL++LW GIDE K+ L+A+ Sbjct: 73 GIGGSIGFALGLANGLSRLSRGLTDTTLQMVRNIPHLALIPLVILWFGIDEEAKLFLVAL 132 Query: 148 GAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLSLAW 207 G FFP+Y+N + GI+ +D +L+E+G G++ +AL ++LP +LP +F GLR L + W Sbjct: 133 GVFFPIYVNTLLGIQSVDPQLVEMGRVYGMDRRALFFRVILPGALPAIFVGLRYALGIMW 192 Query: 208 MFLVAAELIAATKGVGYLLSDGRESSRPDLVLAAILILALLGKLSDGLLRQLETRSLTWR 267 + L+ AE I+A+ G+GY+ RE D+V+ +ILI ALLGKL+D L R LE SL W Sbjct: 193 LTLIVAETISASSGLGYMAMQAREFLLIDVVVLSILIYALLGKLADSLARLLERLSLGWH 252 Query: 268 HARQH 272 A Q+ Sbjct: 253 PAFQN 257 >AGpT164 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 266 Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 107/272 (39%), Positives = 154/272 (56%), Gaps = 7/272 (2%) Query: 1 MPTSTSTARTHRRGWPHDDAYRPGRFTGWIVPLAFLLLVEAGARLELIPARLLPPPSELA 60 + TS T T R Y F W P+ ++L + + L+ +LP P + Sbjct: 2 ITTSAKTPTTAGR-------YLAQAFAPWAFPVIVVILWQIASSGGLLSQGILPSPLAVL 54 Query: 61 HTLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRA 120 WSLA GEL+ H+AAS R A GF IGSAL + G + G+ R E L + S Q LR Sbjct: 55 EAAWSLAASGELVQHMAASFWRAAVGFGIGSALGLFFGFVNGLWRTGETLFDSSLQMLRN 114 Query: 121 IPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQ 180 IPSLA +PL+++W GI E K+ L+A FP+YLN GI+ +D LIE+G GL Sbjct: 115 IPSLAMVPLVIMWFGIGEEAKIFLVAFATMFPIYLNTFHGIKSVDQGLIEMGRNYGLTRT 174 Query: 181 ALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLA 240 L+ ++LP ++ + G+R L +AW+ L+ AE IAA+ G+G L ++ RE + D+V+ Sbjct: 175 GLVRDVILPGAMSSILVGVRYALGVAWIVLIVAETIAASSGIGLLATNAREFLQSDVVVL 234 Query: 241 AILILALLGKLSDGLLRQLETRSLTWRHARQH 272 +I++ ALLGKL+D L R E R L W + Q Sbjct: 235 SIILYALLGKLTDWLARLAENRWLRWHPSYQK 266 >YPO3626 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Ype Yersinia pestis Length = 265 Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 150/250 (60%) Query: 25 RFTGWIVPLAFLLLVEAGARLELIPARLLPPPSELAHTLWSLAQRGELLPHIAASLARVA 84 R WI+P+A ++ + + R+LP PS + W+L + GEL H+ S R Sbjct: 12 RLAPWILPVALVVGWQVAVEAGWLSNRILPAPSAVVTAFWALTKSGELWQHLTISSWRAL 71 Query: 85 AGFVIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVL 144 GF IG ++ + LG++ G+SR E LL S Q +R +P LA IPL++LW GIDE+ K+ L Sbjct: 72 IGFSIGGSIGLVLGVITGLSRWGERLLNSSVQMIRNVPHLALIPLVILWFGIDESAKIFL 131 Query: 145 IAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLS 204 +A+G FP+YLN GI++ID L+E+ + GL+ L+ ++LP +LP + G+R L Sbjct: 132 VALGTLFPIYLNTYHGIKNIDSGLLEMARSYGLSGFRLLTQVVLPGALPSIMVGVRFALG 191 Query: 205 LAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLAAILILALLGKLSDGLLRQLETRSL 264 W+ L+ AE I+A G+GYL + RE + D+V+ AI++ ALLGKL+DG + LE L Sbjct: 192 FMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIVLYALLGKLADGSAQLLERVWL 251 Query: 265 TWRHARQHAD 274 W A Q Sbjct: 252 RWHPAYQQKS 261