BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0075.p         (143 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1513 [L] COG0328 Ribonuclease HI Rso Ralstonia solanacearum        219   1e-57
PA1815 [L] COG0328 Ribonuclease HI Pae Pseudomonas aeruginosa         215   2e-56
CC3365 [L] COG0328 Ribonuclease HI Ccr Caulobacter vibrioides         211   4e-55
mlr7504 [L] COG0328 Ribonuclease HI Mlo Mesorhizobium loti            199   2e-51
NMB1618 [L] COG0328 Ribonuclease HI Nme Neisseria meningitidis MC58   197   6e-51

>RSc1513 [L] COG0328 Ribonuclease HI Rso Ralstonia solanacearum
          Length = 151

 Score =  219 bits (558), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/141 (73%), Positives = 116/141 (82%)

Query: 1   MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 60
           M +V +YSDGACKGNPG GGWG +LV+GG EKE+FGGE  TTNNRMELMAVI+A  ALKR
Sbjct: 1   MQEVTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVTTNNRMELMAVIEAFRALKR 60

Query: 61  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 120
           PC V V+TDSQYVQKGISEW+ GWKARGWKTA K+PVKN DLW+ LD     H+V W WV
Sbjct: 61  PCRVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVVTHEVSWHWV 120

Query: 121 RGHNGHAGNERADQLANRGVE 141
           +GH GH GNERAD LAN+GVE
Sbjct: 121 KGHAGHPGNERADALANKGVE 141


>PA1815 [L] COG0328 Ribonuclease HI Pae Pseudomonas aeruginosa
          Length = 148

 Score =  215 bits (548), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/142 (71%), Positives = 119/142 (83%)

Query: 2   DKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKRP 61
           ++V IY+DGACKGNPGRGGWGALL+  G E+E++GGEP+TTNNRMELMA IQAL ALKR 
Sbjct: 5   EQVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDTTNNRMELMAAIQALAALKRS 64

Query: 62  CEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWVR 121
           C + + TDS+YV +GI+EW+  WK RGWKTASK+PVKNADLWQALD    +HQVEW+WVR
Sbjct: 65  CPIRLITDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVARHQVEWQWVR 124

Query: 122 GHNGHAGNERADQLANRGVESI 143
           GH G  GNERADQLANRGV  +
Sbjct: 125 GHTGDPGNERADQLANRGVAEL 146


>CC3365 [L] COG0328 Ribonuclease HI Ccr Caulobacter vibrioides
          Length = 149

 Score =  211 bits (537), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 111/138 (80%)

Query: 3   KVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKRPC 62
           KV IY+DGACKGNPG GGWGA+L  G K+KEI GGEP TTNNRMELMA IQAL  L RPC
Sbjct: 4   KVTIYTDGACKGNPGPGGWGAILFYGDKKKEICGGEPGTTNNRMELMAAIQALELLNRPC 63

Query: 63  EVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWVRG 122
            V +HTDSQYV KGI EWI GWKARGWKTA K PVKN DLW+ LDAA+ +H V+WRWV+G
Sbjct: 64  VVELHTDSQYVMKGIQEWIRGWKARGWKTADKSPVKNDDLWKRLDAARARHDVDWRWVKG 123

Query: 123 HNGHAGNERADQLANRGV 140
           H GH  NERAD LAN G+
Sbjct: 124 HAGHPLNERADALANEGL 141


>mlr7504 [L] COG0328 Ribonuclease HI Mlo Mesorhizobium loti
          Length = 177

 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 108/138 (78%)

Query: 3   KVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKRPC 62
           +VEI++DGAC GNPG GGWGA+L   G  KE+ GGE  TTNNRMEL+A I ALNALK PC
Sbjct: 4   QVEIFTDGACSGNPGPGGWGAILRFNGTTKELSGGEAETTNNRMELLAAISALNALKEPC 63

Query: 63  EVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWVRG 122
            V +HTDS+YV  GIS+WIHGWK  GWKTA K+PVKN +LWQALD A ++H+V W WV+G
Sbjct: 64  TVELHTDSKYVMDGISKWIHGWKKNGWKTADKKPVKNGELWQALDEANRRHKVTWNWVKG 123

Query: 123 HNGHAGNERADQLANRGV 140
           H GH  NERAD+LA  G+
Sbjct: 124 HAGHTENERADELAREGM 141


>NMB1618 [L] COG0328 Ribonuclease HI Nme Neisseria meningitidis MC58
          Length = 145

 Score =  197 bits (501), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 92/136 (67%), Positives = 106/136 (77%)

Query: 4   VEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKRPCE 63
           V +Y+DGACKGNPG GGWG L+  G  EKE+FGGE  TTNNRMEL AVI+ L +LKR C 
Sbjct: 5   VYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRRCT 64

Query: 64  VVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWVRGH 123
           V++ TDSQYV+ G+  WIHGWK  GWKTASK+PVKN DLW+ LDA   +HQV W WV+GH
Sbjct: 65  VIICTDSQYVKNGMENWIHGWKRNGWKTASKQPVKNDDLWKELDALVGRHQVSWTWVKGH 124

Query: 124 NGHAGNERADQLANRG 139
            GHA NERAD LANRG
Sbjct: 125 AGHAENERADDLANRG 140