BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0065.p         (99 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1174 [R] COG4174 ABC-type uncharacterized transport system, p...    77   7e-15
mll5491 Non COG                                                        66   2e-11
BMEI1936 [R] COG4174 ABC-type uncharacterized transport system, ...    65   5e-11
SMc02831 [R] COG4174 ABC-type uncharacterized transport system, ...    62   4e-10
AGc318 [R] COG4174 ABC-type uncharacterized transport system, pe...    60   1e-09

>RSc1174 [R] COG4174 ABC-type uncharacterized transport system, permease
          component Rso Ralstonia solanacearum
          Length = 351

 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 11/79 (13%)

Query: 3  IWSYIVKRVLLMIPTLFGVVAITFAVIQFVPGGPVEQAMLEMKGR--------GGGGEAV 54
          +++Y++KR+LL+IPTL GVV +TF VIQFVPGGPVEQ ++EMKGR        GGGG   
Sbjct: 1  MFAYLIKRLLLLIPTLIGVVTLTFVVIQFVPGGPVEQMLMEMKGRGSGIVEASGGGGMEY 60

Query: 55 RPVAARRVXGPRPIAAGRA 73
          R    RR   P  I   RA
Sbjct: 61 R---GRRGVDPEKIKEIRA 76


>mll5491 Non COG
          Length = 364

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 37/40 (92%)

Query: 5  SYIVKRVLLMIPTLFGVVAITFAVIQFVPGGPVEQAMLEM 44
          +YI++R+LLMIPTLFG++AI+FAVIQF PGGPVEQ + ++
Sbjct: 3  AYILRRILLMIPTLFGIMAISFAVIQFAPGGPVEQVIAKL 42


>BMEI1936 [R] COG4174 ABC-type uncharacterized transport system, permease
          component Bme Brucella melitensis
          Length = 365

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 40/45 (88%)

Query: 5  SYIVKRVLLMIPTLFGVVAITFAVIQFVPGGPVEQAMLEMKGRGG 49
          +YI++R+LLM+PTL G++AI+FAV+QF PGGPVE+ + ++ G+GG
Sbjct: 3  AYILRRLLLMVPTLLGIMAISFAVVQFAPGGPVERVIAQLSGQGG 47


>SMc02831 [R] COG4174 ABC-type uncharacterized transport system, permease
          component Sme Sinorhizobium meliloti
          Length = 360

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 37/45 (82%)

Query: 5  SYIVKRVLLMIPTLFGVVAITFAVIQFVPGGPVEQAMLEMKGRGG 49
          +YI++R+LLMIPT+ G++AI+FAV+QF PGGPVEQ + ++    G
Sbjct: 3  AYILRRLLLMIPTIVGIMAISFAVVQFAPGGPVEQVISDLTNAAG 47


>AGc318 [R] COG4174 ABC-type uncharacterized transport system, permease
          component Atu Agrobacterium tumefaciens strain C58
          (Cereon)
          Length = 364

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 40/56 (71%), Gaps = 8/56 (14%)

Query: 5  SYIVKRVLLMIPTLFGVVAITFAVIQFVPGGPVEQAMLEMKGRG--------GGGE 52
          +YI++R+ LMIPT+ G++ I+F VIQF PGGPVEQ + ++ G+G        GGG+
Sbjct: 3  AYILRRLALMIPTIVGIMGISFLVIQFAPGGPVEQVVAQLTGQGDSASDRLSGGGD 58