BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0030.p (278 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2365 [E] COG1982 Arginine/lysine/ornithine decarboxylases Rso... 444 e-124 PA1818 [E] COG1982 Arginine/lysine/ornithine decarboxylases Pae ... 279 5e-75 SMa0682 Non COG 255 8e-68 VC0281 [E] COG1982 Arginine/lysine/ornithine decarboxylases Vch ... 196 6e-50 STM2559 [E] COG1982 Arginine/lysine/ornithine decarboxylases Sty... 195 9e-50 >RSc2365 [E] COG1982 Arginine/lysine/ornithine decarboxylases Rso Ralstonia solanacearum Length = 759 Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust. Identities = 199/286 (69%), Positives = 246/286 (86%), Gaps = 9/286 (3%) Query: 1 MKKIDQEF---------GDEWWFQVWGPNSFAADGIGEREDWVIKAEDDWHGFGNLAPGF 51 M+K++QE+ GD+WWF+VWGPN + +GI ERE W++KA + WHGFG+LA F Sbjct: 474 MRKVEQEYVGTNGGNGRGDDWWFKVWGPNDLSDEGIEEREAWMLKANERWHGFGDLAEDF 533 Query: 52 NMLDPIKATIVNPGLALNGQFGETGIPASIVTKYLAEHGVIVEKCGLYSFFIMFTIGITK 111 N+LDPIKATI+ PGL ++G+F E+GIPA+IVTKYLAEHG+IVEK GLYSFFIMFTIGITK Sbjct: 534 NLLDPIKATIITPGLDVDGKFSESGIPAAIVTKYLAEHGIIVEKTGLYSFFIMFTIGITK 593 Query: 112 GRWNTLVTALQQFKDDYDKNQPIWRILPEFAQRNPRYERLGLRDLCQQIHETYRAYDVAR 171 GRWN++VT LQQFKDDYD NQP+WR+LPEF ++ P+YER+GLR+LC IH Y+A DVAR Sbjct: 594 GRWNSMVTELQQFKDDYDNNQPLWRVLPEFVRQYPQYERIGLRELCDAIHSVYKANDVAR 653 Query: 172 LTTEMYLSDMQPAMKPSDAFSKMAHREIERVPLDELEGRVTSILLTPYPPGIPLLIPGEI 231 +TTEMYLS+M+PAMKPSDA++KMAHRE ERV +D+LEGR+T+ILLTPYPPGIPLLIPGE Sbjct: 654 VTTEMYLSNMEPAMKPSDAWAKMAHRETERVAIDDLEGRITAILLTPYPPGIPLLIPGER 713 Query: 232 FNKTIVDYLKFARDFNEKFPGFETDVHGLVKREVNGRRDYFVDCVK 277 FN+TIV YL+FAR+FN+ FPGFETD+HGLV+ E+ GR YFVDCV+ Sbjct: 714 FNRTIVQYLQFAREFNKLFPGFETDIHGLVEEEIEGRVGYFVDCVR 759 >PA1818 [E] COG1982 Arginine/lysine/ornithine decarboxylases Pae Pseudomonas aeruginosa Length = 751 Score = 279 bits (713), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 130/274 (47%), Positives = 185/274 (67%), Gaps = 6/274 (2%) Query: 10 DEWWFQVWGPNSF-AADGIGEREDWVIKAEDDWHGFGNLAPGFNMLDPIKATIVNPGLAL 68 ++WWF VW P D +G DWV++ DWHGFG++A + +LDPIK T+ PGL+ Sbjct: 479 NDWWFGVWQPEQVEGTDQVGT-HDWVLEPSADWHGFGDIAEDYVLLDPIKVTLTTPGLSA 537 Query: 69 NGQFGETGIPASIVTKYLAEHGVIVEKCGLYSFFIMFTIGITKGRWNTLVTALQQFKDDY 128 G+ E GIPA+IV+++L E G++VEK GLYSF ++F++GITKG+W+TLVT L +FK Y Sbjct: 538 GGKLSEQGIPAAIVSRFLWERGLVVEKTGLYSFLVLFSMGITKGKWSTLVTELLEFKRCY 597 Query: 129 DKNQPIWRILPEFAQR-NPRYERLGLRDLCQQIHETYRAYDVARLTTEMYLSDMQPAMKP 187 D N P+ +LP AQ RY +GLRDL +H +YR A+ MY + AM+P Sbjct: 598 DANLPLLDVLPSVAQAGGKRYNGVGLRDLSDAMHASYRDNATAKAMKRMYTVLPEVAMRP 657 Query: 188 SDAFSKMAHREIERVPLDELEGRVTSILLTPYPPGIPLLIPGEIF---NKTIVDYLKFAR 244 S+A+ K+ E+E VP+ LEGR+ +++L PYPPGIPL++PGE F ++I+DYL+FAR Sbjct: 658 SEAYDKLVRGEVEAVPIARLEGRIAAVMLVPYPPGIPLIMPGERFTEATRSILDYLEFAR 717 Query: 245 DFNEKFPGFETDVHGLVKREVNGRRDYFVDCVKQ 278 F FPGF++DVHGL ++ R Y V+C+K+ Sbjct: 718 TFERAFPGFDSDVHGLQHQDGPSGRCYTVECIKE 751 >SMa0682 Non COG Length = 731 Score = 255 bits (651), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 126/282 (44%), Positives = 180/282 (63%), Gaps = 4/282 (1%) Query: 1 MKKIDQEFGDEWWFQVWGPNSFAADGIGEREDWVIKAEDDWHGFGNLAPGFNMLDPIKAT 60 + + + D WWF+VW P DW++K D WHGF +LA M+DPIK T Sbjct: 443 VNAVRTQMQDSWWFEVWEPPIADRAPSDATSDWLLKPGDAWHGFEDLAENHVMVDPIKVT 502 Query: 61 IVNPGLALNGQFGETGIPASIVTKYLAEHGVIVEKCGLYSFFIMFTIGITKGRWNTLVTA 120 I++PGL G E GIPA++VTK+L+ + +EK GLYSF ++F++GIT+G+W+TL+T Sbjct: 503 ILSPGLNAGGAMLEHGIPAAVVTKFLSSRRIEIEKTGLYSFLVLFSMGITRGKWSTLITE 562 Query: 121 LQQFKDDYDKNQPIWRILPEFAQRNPR-YERLGLRDLCQQIHETYRAYDVARLTTEMYLS 179 L FKD YD N P+ R LP A +P Y +GLRDLC++IH+ YR+ V EMY Sbjct: 563 LLNFKDLYDANAPLSRALPALAAAHPDVYRAMGLRDLCEKIHDVYRSDGVPNAQREMYTV 622 Query: 180 DMQPAMKPSDAFSKMAHREIERVPLDELEGRVTSILLTPYPPGIPLLIPGE---IFNKTI 236 + A++P+DA++++ +E V +DEL GR ++++ PYPPGIPL++PGE ++I Sbjct: 623 LPEMALRPADAYNRLVKGCVESVDIDELIGRTLAVMIVPYPPGIPLIMPGERITAATRSI 682 Query: 237 VDYLKFARDFNEKFPGFETDVHGLVKREVNGRRDYFVDCVKQ 278 DYL +AR F+ KFPGFETD+HGL R Y VDC+ + Sbjct: 683 QDYLVYARSFDRKFPGFETDIHGLRFVANPSGRRYLVDCIVE 724 >VC0281 [E] COG1982 Arginine/lysine/ornithine decarboxylases Vch Vibrio cholerae Length = 733 Score = 196 bits (497), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 99/259 (38%), Positives = 158/259 (61%), Gaps = 13/259 (5%) Query: 12 WWFQVWGPNSFAADGIGEREDWVIKAEDDWHGFGNLAPGFNMLDPIKATIVNPGLALNGQ 71 W+F VW P + I E W + DWHGF NL LDPIK T++ PG++ +G+ Sbjct: 471 WFFDVWQP-----ENIETTECWKLDPNQDWHGFKNLDDNHMYLDPIKITLLTPGMSKDGE 525 Query: 72 FGETGIPASIVTKYLAEHGVIVEKCGLYSFFIMFTIGITKGRWNTLVTALQQFKDDYDKN 131 ++GIPAS+V+KYL EHG++VEK G Y+ +F+IGI K + L+ L +FK YD N Sbjct: 526 LEQSGIPASLVSKYLDEHGIVVEKTGPYNLLFLFSIGIDKSKAMQLLRGLTEFKRGYDLN 585 Query: 132 QPIWRILPEFAQRNPR-YERLGLRDLCQQIHETYRAYDVARLTTEMYLSDMQPAMK--PS 188 I +LP + +P YE + +++L Q IH+ R Y + L + + D+ P MK P Sbjct: 586 LTIRTMLPSLYREDPVFYEGMRIQELAQGIHDLTRKYQLPELMYKAF--DVLPEMKVTPH 643 Query: 189 DAFSKMAHREIERVPLDELEGRVTSILLTPYPPGIPLLIPGEIF---NKTIVDYLKFARD 245 A+ + + E + L+E+ GRV++ ++ PYPPG+PL++PGE+ ++ ++D+L+ + Sbjct: 644 VAWQQELRGQTEEILLNEMVGRVSANMILPYPPGVPLVLPGEMVTDSSRPVLDFLEMLCE 703 Query: 246 FNEKFPGFETDVHGLVKRE 264 +PGFETD+HGL +++ Sbjct: 704 IGAHYPGFETDIHGLYRQK 722 >STM2559 [E] COG1982 Arginine/lysine/ornithine decarboxylases Sty Salmonella typhimurium LT2 Length = 714 Score = 195 bits (496), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 106/282 (37%), Positives = 164/282 (58%), Gaps = 13/282 (4%) Query: 1 MKKIDQEFGDEWWFQVWGPNSFAADGIGEREDWVIKAEDDWHGFGNLAPGFNMLDPIKAT 60 +K++ E D W+F VW P + I E W ++++ WHGF N+ LDPIK T Sbjct: 439 IKRLKSE-SDGWFFDVWQP-----EHIDGAECWPLRSDSAWHGFKNIDNEHMYLDPIKVT 492 Query: 61 IVNPGLALNGQFGETGIPASIVTKYLAEHGVIVEKCGLYSFFIMFTIGITKGRWNTLVTA 120 I+ PG+ +G E GIPAS+V KYL E G+IVEK G Y+ +F+IGI K + +L+ A Sbjct: 493 ILTPGMKKDGTMDEFGIPASLVAKYLDERGIIVEKTGPYNLLFLFSIGIDKTKALSLLRA 552 Query: 121 LQQFKDDYDKNQPIWRILPEFAQRNPR-YERLGLRDLCQQIHETYRAYDVARLTTEMYLS 179 L +FK +D N + ILP + P YE + +++L Q IH+ +++ L + Sbjct: 553 LTEFKRAFDLNLRVKNILPALYREAPEFYENMRIQELAQNIHKLVEHHNLPDLMYRAFEV 612 Query: 180 DMQPAMKPSDAFSKMAHREIERVPLDELEGRVTSILLTPYPPGIPLLIPGEIF---NKTI 236 + M P AF K H E E V L+E+ GRV + ++ PYPPG+PL++PGE+ ++ + Sbjct: 613 LPKMVMTPYTAFQKELHGETEEVYLEEMVGRVNANMILPYPPGVPLVMPGEMITEESRPV 672 Query: 237 VDYLKFARDFNEKFPGFETDVHGLVKREVNGRRDYFVDCVKQ 278 +++L+ + +PGFETD+HG R+ +GR Y V +K+ Sbjct: 673 LEFLQMLCEIGAHYPGFETDIHG-AYRQADGR--YTVKVLKE 711