BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0029.p         (176 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0980 [P] COG2059 Chromate transport protein ChrA Rso Ralstoni...   118   6e-27
MJ0718 [P] COG2059 Chromate transport protein ChrA Mja Methanoco...    69   4e-12
BS_ywrA [P] COG2059 Chromate transport protein ChrA Bsu Bacillus...    69   8e-12
all1110 [P] COG2059 Chromate transport protein ChrA Nos Nostoc s...    68   9e-12
BH0870 [P] COG2059 Chromate transport protein ChrA Bha Bacillus ...    67   2e-11

>RSc0980 [P] COG2059 Chromate transport protein ChrA Rso Ralstonia
           solanacearum
          Length = 181

 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 96/158 (60%)

Query: 12  FTQLSVLAFGGGNTILPEMQRQVVEVHHWMSAEDFSALFALGQAAPGPNLMVVTLVGWHV 71
           FT LS LA GG ++ LP+M R +V+  H+M++E  SA++A+ QAAPGPN++ V L GW  
Sbjct: 19  FTVLSFLAIGGASSTLPDMHRFLVDTRHYMTSEQLSAMYAISQAAPGPNVLFVELFGWQA 78

Query: 72  AGFWGMLVTSLAKFGPSSIITIIMLHVWERFKDKPWRRHVQAGLLPVTGGLVAASALLIT 131
           AG  G +V  L   GPS +I  I+ HV  +  D  W   ++ GL P+T GL+ ++  ++ 
Sbjct: 79  AGLGGAVVAMLGICGPSCVIAGIVAHVMHQAPDARWVMLIRRGLAPLTIGLLFSTGWVLA 138

Query: 132 QASITHGFLAAITAATAIIALKTKIHPLWLLFGGALAG 169
           +A+       A+T AT +    T++HPL L+  GAL G
Sbjct: 139 RATDHSVGTVALTVATVLACAFTRVHPLILVAAGALVG 176


>MJ0718 [P] COG2059 Chromate transport protein ChrA Mja Methanococcus
           jannaschii
          Length = 402

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 1   MSQTLIALAIIFTQLSVLAFGGGNTILPEMQRQVVEVHHWMSAEDFSALFALGQAAPGPN 60
           +   L  L+ +  ++ V AFGGG   +P M  +VV+ ++ M A+ F    ALGQ  PGP 
Sbjct: 231 IDSKLFLLSTLMMKVDVFAFGGGYGSVPFMLHEVVDKYNLMDAKTFMDGIALGQITPGPI 290

Query: 61  LMVVTLVGWHVAGFWGMLVTSLAKFGPSSIITIIMLHVWERFK-DKPWRRHVQAGLLPVT 119
           ++  T VG+ V GF G ++++++ F PS II +  + +++  K +  ++  +   L+   
Sbjct: 291 VITATFVGYIVGGFIGSIISTISVFTPSFIILLSSIPIFDSLKHNTIFKNILHMILVSFV 350

Query: 120 GGLVAAS 126
           G LVA +
Sbjct: 351 GLLVAVT 357


>BS_ywrA [P] COG2059 Chromate transport protein ChrA Bsu Bacillus subtilis
          Length = 178

 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 16  SVLAFGGGNTILPEMQRQVVEVHHWMSAEDFSALFALGQAAPGP-NLMVVTLVGWHVAGF 74
           ++L +GGG   +P M  +VV  + W+S + FS + AL  A PGP    +   VG+   G+
Sbjct: 14  NLLGYGGGPASIPLMFEEVVNRYSWLSNDQFSNMLALANALPGPIATKIAAYVGYSAGGW 73

Query: 75  WGMLVTSLAKFGPSSIITIIMLHVWERFKDKPWRRHVQAGLLPVTGGLVAASALLITQAS 134
            G L+  +A   PS++  I++L + +RF+  P  + +   + PV    +A   L++T   
Sbjct: 74  PGFLIALIATVVPSALALIVLLRIIQRFRQSPVIKGMTLSVQPV----IAVMMLILTWQI 129

Query: 135 ITHGFLA-------AITAATAIIALKTKIHPLWLLFGGALAG 169
              G  A        IT  + +   K K+HP +L+    L G
Sbjct: 130 GADGIKAIGWVQSIVITGISLLAMTKFKMHPAFLIIAAFLYG 171


>all1110 [P] COG2059 Chromate transport protein ChrA Nos Nostoc sp. PCC 7120
          Length = 402

 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 76/161 (47%)

Query: 10  IIFTQLSVLAFGGGNTILPEMQRQVVEVHHWMSAEDFSALFALGQAAPGPNLMVVTLVGW 69
           + F ++  + +G G  +L  +QR +VE + W++++      A+GQ  PGP     T +G+
Sbjct: 237 LFFLKIGCILYGSGYVLLAFLQRDLVERNQWLTSQQLLDAIAIGQFTPGPVFTTATFIGY 296

Query: 70  HVAGFWGMLVTSLAKFGPSSIITIIMLHVWERFKDKPWRRHVQAGLLPVTGGLVAASALL 129
            +AG  G +  ++  F P+ I+  I+     + +  PW      G+   + GL+A     
Sbjct: 297 LLAGNAGAIAGTIGIFLPAFILVWIVNPWVTKLRQSPWASGFLDGVNAASLGLMAGVTYT 356

Query: 130 ITQASITHGFLAAITAATAIIALKTKIHPLWLLFGGALAGF 170
           + Q ++       +   +AI   + KI+  WL+  G   GF
Sbjct: 357 LGQTALVDWLTIILAIVSAIAVFRFKINSAWLVLAGGAIGF 397


>BH0870 [P] COG2059 Chromate transport protein ChrA Bha Bacillus halodurans
          Length = 180

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 4/163 (2%)

Query: 16  SVLAFGGGNTILPEMQRQVVEVHHWMSAEDFSALFALGQAAPGP-NLMVVTLVGWHVAGF 74
           +++ +GGG   +P +Q +VV+ + WM+  +F  L A+  A PGP    +   +G+ V G 
Sbjct: 14  NIVGYGGGPASIPLIQMEVVDRYGWMTVSEFGELLAISNALPGPIATKMAGYIGYEVGGV 73

Query: 75  WGMLVTSLAKFGPSSIITIIMLHVWERFKDKPWRRHVQAGLLPVTGGL--VAASALLITQ 132
            G  +   A   PS I  + +L +  +FKD P  + + + + P  G L  V A    +T 
Sbjct: 74  LGATIALFATVAPSLIAMVFLLGILYKFKDSPKVKKMTSFVKPTIGVLLGVLAIEFFVTS 133

Query: 133 ASITHGFLAAITAATAIIAL-KTKIHPLWLLFGGALAGFFYLG 174
                 +   + A  + + + K K+HP +++ G  L G  +LG
Sbjct: 134 WEGAGTWQTVLLAGGSFLLMEKWKVHPAFVIAGSLLYGALFLG 176