BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0017.p         (60 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1251 [L] COG1643 HrpA-like helicases Rso Ralstonia solanacearum     61   6e-10

>RSc1251 [L] COG1643 HrpA-like helicases Rso Ralstonia solanacearum
          Length = 1331

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 35/48 (72%)

Query: 1    MQAQLSQLVGKRFVAETDYGNLSHYPRYLKAINVRLDKLHADPARDTR 48
            + AQL  L+ KRF+  T Y  L+H+PRYLK I +R+DKL ADP RDT+
Sbjct: 1211 IDAQLKALMHKRFIEATPYAQLAHFPRYLKGIAMRIDKLKADPTRDTQ 1258