BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0065.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0348 [N] COG2063 Flagellar basal body L-ring protein Rso Rals... 111 1e-24 flgH [N] COG2063 Flagellar basal body L-ring protein Eco Escheri... 103 3e-22 ZflgH [N] COG2063 Flagellar basal body L-ring protein EcZ Escher... 103 3e-22 ECs1457 [N] COG2063 Flagellar basal body L-ring protein Ecs Esch... 103 3e-22 STM1180 [N] COG2063 Flagellar basal body L-ring protein Sty Salm... 102 4e-22 >RSp0348 [N] COG2063 Flagellar basal body L-ring protein Rso Ralstonia solanacearum Length = 244 Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 119/225 (52%), Gaps = 13/225 (5%) Query: 6 RLAGACTLAALLSACN---SPAPMVIGPTSVRPAYQVANVENNGAIFR-VSSAQ-----L 56 RLA T + L +AC P P+V GPT+ RP V NGAI++ V+S + Sbjct: 20 RLAALGTASLLAAACGMLPPPEPIVQGPTTARPPMPVMAPRQNGAIYQEVASGSGGFRGM 79 Query: 57 FEEPTAYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANY 116 FE+ A+ VGD I I I+E+ ++S + + + R S T P G+ + L Sbjct: 80 FEDRRAHMVGDTITIVITENTAASKQTSGSVDRSGSKTTSVPTFAGMNPGVLSLL---GV 136 Query: 117 SASGNNTFKGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVV 176 SAS N F G + TN + T+ V++VEVL N NLVV+GEK++ V +++FSGVV Sbjct: 137 SASDANKFDSKGANGATNNFTATITVTVVEVLSNGNLVVSGEKQMAVGQGTESIKFSGVV 196 Query: 177 RTRDIRG-GIVASSNVADARLEQVGGGSIADASTDGNFFRRLLTI 220 + V S+ VADAR+E G G +A+A G R L++ Sbjct: 197 NPTTVNNQNTVLSTQVADARMEYRGTGYVAEAQQMGWLSRFFLSV 241 >flgH [N] COG2063 Flagellar basal body L-ring protein Eco Escherichia coli K12 Length = 232 Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/205 (40%), Positives = 111/205 (54%), Gaps = 13/205 (6%) Query: 25 PMVIGPTSVRPAYQVANVENNGAIFRVSSAQ--------LFEEPTAYNVGDIIKIDISES 76 P+V G TS +P V N G+IF+ SAQ LFE+ N+GD + I + E+ Sbjct: 29 PLVQGATSAQPVPGPTPVAN-GSIFQ--SAQPINYGYQPLFEDRRPRNIGDTLTIVLQEN 85 Query: 77 ISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANYSASGNNTFKGSGDSSNTNTM 136 +S+S ++ N SRD L GLF A+ ASG NTF G G ++ +NT Sbjct: 86 VSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA-RADVEASGGNTFNGKGGANASNTF 144 Query: 137 SGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRDIRGG-IVASSNVADAR 195 SGTL V++ +VL N NL V GEK+I +N +RFSGVV R I G V S+ VADAR Sbjct: 145 SGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADAR 204 Query: 196 LEQVGGGSIADASTDGNFFRRLLTI 220 +E VG G I +A G R L + Sbjct: 205 IEYVGNGYINEAQNMGWLQRFFLNL 229 >ZflgH [N] COG2063 Flagellar basal body L-ring protein EcZ Escherichia coli O157:H7 EDL933 Length = 232 Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/205 (40%), Positives = 111/205 (54%), Gaps = 13/205 (6%) Query: 25 PMVIGPTSVRPAYQVANVENNGAIFRVSSAQ--------LFEEPTAYNVGDIIKIDISES 76 P+V G TS +P V N G+IF+ SAQ LFE+ N+GD + I + E+ Sbjct: 29 PLVQGATSAQPVPGPTPVAN-GSIFQ--SAQPINYGYQPLFEDRRPRNIGDTLTIVLQEN 85 Query: 77 ISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANYSASGNNTFKGSGDSSNTNTM 136 +S+S ++ N SRD L GLF A+ ASG NTF G G ++ +NT Sbjct: 86 VSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA-RADVEASGGNTFNGKGGANASNTF 144 Query: 137 SGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRDIRGG-IVASSNVADAR 195 SGTL V++ +VL N NL V GEK+I +N +RFSGVV R I G V S+ VADAR Sbjct: 145 SGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADAR 204 Query: 196 LEQVGGGSIADASTDGNFFRRLLTI 220 +E VG G I +A G R L + Sbjct: 205 IEYVGNGYINEAQNMGWLQRFFLNL 229 >ECs1457 [N] COG2063 Flagellar basal body L-ring protein Ecs Escherichia coli O157:H7 Length = 232 Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/205 (40%), Positives = 111/205 (54%), Gaps = 13/205 (6%) Query: 25 PMVIGPTSVRPAYQVANVENNGAIFRVSSAQ--------LFEEPTAYNVGDIIKIDISES 76 P+V G TS +P V N G+IF+ SAQ LFE+ N+GD + I + E+ Sbjct: 29 PLVQGATSAQPVPGPTPVAN-GSIFQ--SAQPINYGYQPLFEDRRPRNIGDTLTIVLQEN 85 Query: 77 ISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANYSASGNNTFKGSGDSSNTNTM 136 +S+S ++ N SRD L GLF A+ ASG NTF G G ++ +NT Sbjct: 86 VSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA-RADVEASGGNTFNGKGGANASNTF 144 Query: 137 SGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRDIRGG-IVASSNVADAR 195 SGTL V++ +VL N NL V GEK+I +N +RFSGVV R I G V S+ VADAR Sbjct: 145 SGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADAR 204 Query: 196 LEQVGGGSIADASTDGNFFRRLLTI 220 +E VG G I +A G R L + Sbjct: 205 IEYVGNGYINEAQNMGWLQRFFLNL 229 >STM1180 [N] COG2063 Flagellar basal body L-ring protein Sty Salmonella typhimurium LT2 Length = 232 Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 119/219 (54%), Gaps = 15/219 (6%) Query: 13 LAALLSACNS-PA-PMVIGPTSVRPAYQVANVENNGAIFRVSSAQ--------LFEEPTA 62 + A L+ C PA P+V G T+ +P V N G+IF+ SAQ LFE+ Sbjct: 15 MVATLTGCAWIPAKPLVQGATTAQPIPGPVPVAN-GSIFQ--SAQPINYGYQPLFEDRRP 71 Query: 63 YNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANYSASGNN 122 N+GD + I + E++S+S ++ N SRD + L GLF A+ ASG N Sbjct: 72 RNIGDTLTIVLQENVSASKSSSANASRDGKTSFGFDTVPRYLQGLFGN-SRADMEASGGN 130 Query: 123 TFKGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRDIR 182 +F G G ++ +NT SGTL V++ +VL N NL V GEK+I +N +RFSGVV R I Sbjct: 131 SFNGKGGANASNTFSGTLTVTVDQVLANGNLHVVGEKQIAINQGTEFIRFSGVVNPRTIS 190 Query: 183 GG-IVASSNVADARLEQVGGGSIADASTDGNFFRRLLTI 220 G V S+ VADAR+E VG G I +A G R L + Sbjct: 191 GSNSVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNL 229