BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0058.p (421 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2347 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 507 e-143 PA2325 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 429 e-120 AGpA773 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tu... 419 e-117 mlr5225 [I] COG1960 Acyl-CoA dehydrogenases Mlo Mesorhizobium loti 415 e-115 PA2346 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 397 e-110 >PA2347 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 405 Score = 507 bits (1305), Expect = e-143, Method: Compositional matrix adjust. Identities = 263/391 (67%), Positives = 311/391 (79%), Gaps = 2/391 (0%) Query: 31 RIRDDAEAIAAARKLAEDFSREAALRDRERKLPWDELERYVRSGLWGITVPKEYGGAGVS 90 RI D EA+ AR+LA F+RE+ RDRER+LP +ELE + RSGLWGI VP+EYGGAGVS Sbjct: 17 RIGSDDEALETARELAALFARESIQRDRERRLPLEELELFSRSGLWGIAVPREYGGAGVS 76 Query: 91 YGTLAEVIATISAADGSIGQIPQNHFYAVELIRVNGSESQKRFFFERVLQGDRFGNALAE 150 TLA+V+A +SAAD S+GQIPQNHFYA+E++RVNGS +QK F L G+RFGNALAE Sbjct: 77 RVTLAKVVAIVSAADSSLGQIPQNHFYALEVLRVNGSPAQKGRLFGAALAGERFGNALAE 136 Query: 151 LGTKTSHDRKTRLSRNAHGPGYRIDGRKFYATGALYADWVPTSVIDDDGVQQLAIVPRHA 210 +GT+T+ +R+TRL A G GYR+DGRKFY TGALYA VPT +DD+G QQLA VPR + Sbjct: 137 IGTRTASERRTRL--RADGDGYRLDGRKFYCTGALYAQRVPTLAVDDEGRQQLAFVPRDS 194 Query: 211 PGLTIIDDWSGFGQRTTGSGSAVFENVHVPADAVIGFATAFSRPTQIGPMAQIQHAAIDL 270 GL I+DDWSGFGQRTTGSGSA+F+ V V A+ V+ F AF RPT +GP+AQI HAAID Sbjct: 195 AGLEIVDDWSGFGQRTTGSGSALFDRVAVAAEDVVSFQDAFERPTTVGPLAQILHAAIDA 254 Query: 271 GIARAAYADLLTFVRTRSRAWVDSGVERAVDDPLTIREVGDLTIQLHAAEALLRRAGRKV 330 GIAR A+ D L FVR R+R WVDSGV++A DDPLTI E+G L I+LHAAEALL RAGR + Sbjct: 255 GIARGAFEDTLRFVRERARPWVDSGVDKASDDPLTIHEIGRLAIRLHAAEALLERAGRVL 314 Query: 331 DAAAAAPDEDSVAAASIAVAEARVLTTEVSLAAGSKLFELAGSQSTLAEHNLDRHWRNAR 390 D A A PD +SVAAASIAVAEAR LTTEV+L AGSKL EL GS++ LAE LDRHWRNAR Sbjct: 315 DRATAEPDAESVAAASIAVAEARALTTEVALLAGSKLIELGGSRACLAELGLDRHWRNAR 374 Query: 391 THTLHDPVRWKYHAIGNYVLNGKKPPRHGAI 421 HTLHDPVRWKYHA+G+Y LNG+ PPR G + Sbjct: 375 VHTLHDPVRWKYHAVGDYYLNGRLPPRRGTL 405 >PA2325 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 411 Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust. Identities = 238/404 (58%), Positives = 298/404 (73%), Gaps = 5/404 (1%) Query: 15 DSFPPPPSGTPPRLVARIRDDAEAIAAARKLAEDFSREAALRDRERKLPWDELERYVRSG 74 D + P TP R RI DDAEAI AR+LA F+ EA+LRDR+R+LP ELE + +SG Sbjct: 10 DPYRQPLPRTPAR---RIADDAEAIRVARELAGLFAEEASLRDRQRRLPVAELEAFSQSG 66 Query: 75 LWGITVPKEYGGAGVSYGTLAEVIATISAADGSIGQIPQNHFYAVELIRVNGSESQKRFF 134 LWGI+VP+ YGGA V Y TLAEV+ TI+A D S+ Q+PQNH ++ +R++GSE QKRFF Sbjct: 67 LWGISVPRAYGGAEVGYRTLAEVLKTIAAVDPSLAQLPQNHLAVLDHLRLDGSEEQKRFF 126 Query: 135 FERVLQGDRFGNALAELGTKTSHDRKTRLSRNAHGPGYRIDGRKFYATGALYADWVPTSV 194 + VL G RFGNA +E ++T + +TR+ A G G+RIDGRKFY++GAL A WVP Sbjct: 127 YGLVLDGVRFGNAFSERHSRTVAEFQTRVL--ADGDGFRIDGRKFYSSGALLAHWVPAVG 184 Query: 195 IDDDGVQQLAIVPRHAPGLTIIDDWSGFGQRTTGSGSAVFENVHVPADAVIGFATAFSRP 254 +D + LA +PR APGLT+IDDWSGFGQRTT SG+ + +NV VPA+ VI AF RP Sbjct: 185 LDAEQRAHLAFIPRDAPGLTVIDDWSGFGQRTTASGTVILDNVRVPAEHVIPVHRAFDRP 244 Query: 255 TQIGPMAQIQHAAIDLGIARAAYADLLTFVRTRSRAWVDSGVERAVDDPLTIREVGDLTI 314 T G ++Q AAID GIAR A+ + VR +R W+D+ + A +DP TI++VGDL I Sbjct: 245 TAAGAVSQFIQAAIDAGIARGILAETVQQVRRHARPWIDANQQHAWEDPYTIQQVGDLRI 304 Query: 315 QLHAAEALLRRAGRKVDAAAAAPDEDSVAAASIAVAEARVLTTEVSLAAGSKLFELAGSQ 374 ++ AAEA+L A ++AA AAPDE+SVAAASIAVAEA+VLTTE +L A ++LFELAG++ Sbjct: 305 RVRAAEAVLDLAADAIEAALAAPDEESVAAASIAVAEAKVLTTEAALLAANRLFELAGTR 364 Query: 375 STLAEHNLDRHWRNARTHTLHDPVRWKYHAIGNYVLNGKKPPRH 418 STL E NLDRHWRNARTHTLHDPVRWKYHAIGNY LNG KPPRH Sbjct: 365 STLEELNLDRHWRNARTHTLHDPVRWKYHAIGNYQLNGVKPPRH 408 >AGpA773 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 425 Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust. Identities = 215/401 (53%), Positives = 278/401 (69%), Gaps = 7/401 (1%) Query: 23 GTP--PRLVAR---IRDDAEAIAAARKLAEDFSREAALRDRERKLPWDELERYVRSGLWG 77 G P PR R IR DAEAI A+ +A + + AALRDR+R P EL+ + +SGLW Sbjct: 24 GVPAVPRPTERAHIIRSDAEAIEVAKIVAAEIAPGAALRDRDRIWPVKELDAFSQSGLWS 83 Query: 78 ITVPKEYGGAGVSYGTLAEVIATISAADGSIGQIPQNHFYAVELIRVNGSESQKRFFFER 137 I VPK++GG VSY TLA+VI +SAAD SIGQI QNH V IR E+Q++ F Sbjct: 84 INVPKKFGGPEVSYATLAKVIEIVSAADSSIGQIAQNHLGVVAAIRTVSDEAQQKLLFAE 143 Query: 138 VLQGDRFGNALAELGTKTSHDRKTRLSRNAHGPGYRIDGRKFYATGALYADWVPTSVIDD 197 VL+G RFGNA +E G+K + D +T+ G ++G+KFY++GAL A VP +DD Sbjct: 144 VLRGTRFGNAFSEFGSKRAADFETKFVDA--GDHVIVNGQKFYSSGALLAHLVPIVALDD 201 Query: 198 DGVQQLAIVPRHAPGLTIIDDWSGFGQRTTGSGSAVFENVHVPADAVIGFATAFSRPTQI 257 +G AI R APGLT+IDDWS FGQRTT SG+ + NV VP ++ ++ PT Sbjct: 202 EGRAWYAIAERDAPGLTVIDDWSSFGQRTTLSGTVILNNVKVPKTYLVPGYKGYAEPTAD 261 Query: 258 GPMAQIQHAAIDLGIARAAYADLLTFVRTRSRAWVDSGVERAVDDPLTIREVGDLTIQLH 317 G + QI A+D GIARAA + ++FVRT+SRAWVDSGV+ A DDP TI+ VGDLT++LH Sbjct: 262 GAIFQIIQVAVDTGIARAAIDETVSFVRTKSRAWVDSGVDHAWDDPYTIQAVGDLTLRLH 321 Query: 318 AAEALLRRAGRKVDAAAAAPDEDSVAAASIAVAEARVLTTEVSLAAGSKLFELAGSQSTL 377 AA+ALL +AG +D A P+ ++VA A + AEA++L TE+++AA +KLFELAG++STL Sbjct: 322 AAQALLEKAGYAIDRAIQNPNAETVAEAQVVTAEAKILATEIAIAATNKLFELAGTRSTL 381 Query: 378 AEHNLDRHWRNARTHTLHDPVRWKYHAIGNYVLNGKKPPRH 418 AEH+LDRHWRNARTHTLHDPVRWKY +G Y LNG+KPP H Sbjct: 382 AEHHLDRHWRNARTHTLHDPVRWKYSILGKYFLNGEKPPLH 422 >mlr5225 [I] COG1960 Acyl-CoA dehydrogenases Mlo Mesorhizobium loti Length = 415 Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust. Identities = 220/399 (55%), Positives = 275/399 (68%), Gaps = 2/399 (0%) Query: 20 PPSGTPPRLVARIRDDAEAIAAARKLAEDFSREAALRDRERKLPWDELERYVRSGLWGIT 79 PP P IRDDAEAIA A LA +F +E++ RDRER P EL+ + +SGLW I Sbjct: 16 PPVARPAVPAHIIRDDAEAIAIAHALAAEFVKESSRRDRERVWPVAELDAFSQSGLWSIN 75 Query: 80 VPKEYGGAGVSYGTLAEVIATISAADGSIGQIPQNHFYAVELIRVNGSESQKRFFFERVL 139 VPK +GG VSY TLA+VI ISAAD SIGQI QNH V IR Q++ F VL Sbjct: 76 VPKAFGGPEVSYATLAKVIEIISAADSSIGQIAQNHLGVVAAIRTVSDADQQKLLFAEVL 135 Query: 140 QGDRFGNALAELGTKTSHDRKTRLSRNAHGPGYRIDGRKFYATGALYADWVPTSVIDDDG 199 G RFGNA +E G+K + D +TR + G ++GRKFY++GAL A VP +DD+G Sbjct: 136 NGTRFGNAFSEFGSKRAADFETRFTDA--GDHVVVNGRKFYSSGALLAHLVPIVALDDEG 193 Query: 200 VQQLAIVPRHAPGLTIIDDWSGFGQRTTGSGSAVFENVHVPADAVIGFATAFSRPTQIGP 259 AI R APGLT+IDDWS FGQRTT SG+ + +NV VP ++ + RPT G Sbjct: 194 RAWYAIADRGAPGLTVIDDWSSFGQRTTLSGTVIIDNVKVPKTFLVPGYKGYDRPTADGA 253 Query: 260 MAQIQHAAIDLGIARAAYADLLTFVRTRSRAWVDSGVERAVDDPLTIREVGDLTIQLHAA 319 + QI A+D GIA+AA + + FVRTRSRAW+DSGV+ A DDP TI+ VGDLT++LHAA Sbjct: 254 IFQIIQVAVDTGIAQAAIDETVHFVRTRSRAWIDSGVDNAWDDPYTIQAVGDLTLRLHAA 313 Query: 320 EALLRRAGRKVDAAAAAPDEDSVAAASIAVAEARVLTTEVSLAAGSKLFELAGSQSTLAE 379 +ALL +AG +D A A P ++VA A I AEA++L+TE+++AA +KLFELAG++STLAE Sbjct: 314 QALLEKAGLAIDKAVAEPTAETVAHAQIVTAEAKILSTEIAIAATNKLFELAGTRSTLAE 373 Query: 380 HNLDRHWRNARTHTLHDPVRWKYHAIGNYVLNGKKPPRH 418 HNLDRHWRNARTHTLHDPVRWKY +G Y LNG+ PP H Sbjct: 374 HNLDRHWRNARTHTLHDPVRWKYSILGKYFLNGENPPLH 412 >PA2346 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 411 Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust. Identities = 219/402 (54%), Positives = 274/402 (68%), Gaps = 6/402 (1%) Query: 21 PSGTPPRLVARIRDDAEAIAAARKLAEDFSREAALRDRERKLPWDELERYVRSGLWGITV 80 P P RL I +DA+A+ AA ++A REAALRDRER+LPW ELE + R GL GI + Sbjct: 15 PRLLPARL---IENDAQALQAAHEVAGLARREAALRDRERRLPWQELELFTRLGLGGIGI 71 Query: 81 PKEYGGAGVSYGTLAEVIATISAADGSIGQIPQNHFYAVELIRVNGSESQKRFFFERVLQ 140 P+ +GGA VS+ TLAEV I AAD ++GQIPQN F + +I S +QKR F +L Sbjct: 72 PRAHGGAQVSHVTLAEVFRVICAADPALGQIPQNQFGLLSVIDNVASPAQKRKLFRGILD 131 Query: 141 GDRFGNALAELGTKTSHDRKTRLSRNAHGPGYRIDGRKFYATGALYADWVPTSVIDDDGV 200 G R NA E T+ + + K R+ R+ G GYR+ G KFY+TGAL+A WV ID++ Sbjct: 132 GRRLANAGPERNTRHTLELKARVRRD--GDGYRVSGEKFYSTGALFAHWVAVKAIDEEER 189 Query: 201 QQLAIVPRHAPGLTIIDDWSGFGQRTTGSGSAVFENVHVPADAVIGFATAFSRPTQIGPM 260 + V R APGL I+DDWSGFGQRTT SG+ + + V V D +I P+ G + Sbjct: 190 AVMLFVERGAPGLRIVDDWSGFGQRTTASGTVLLDEVPVAGDMLIHNGLLAEIPSLQGAV 249 Query: 261 AQIQHAAIDLGIARAAYADLLTFVRTRSRAWVDSGVERAVDDPLTIREVGDLTIQLHAAE 320 +Q+ AAID GIA+AA D FVR RSR W+D+ VERA D+ +I EVG L I+LHAA Sbjct: 250 SQLIQAAIDAGIAQAALDDAQAFVRERSRPWIDAQVERASDELYSIAEVGRLQIELHAAN 309 Query: 321 ALLRRAGRKVDAAAAAP-DEDSVAAASIAVAEARVLTTEVSLAAGSKLFELAGSQSTLAE 379 ALL +AG+ +D AA P D +S A ASIAVAEA+VL+TE+SLAA KLFELAGS++TLAE Sbjct: 310 ALLEKAGQVLDEVAARPVDAESAARASIAVAEAKVLSTEISLAASEKLFELAGSRATLAE 369 Query: 380 HNLDRHWRNARTHTLHDPVRWKYHAIGNYVLNGKKPPRHGAI 421 NLDRHWRNARTHTLHDPVRWK HA+G+Y LNG +P RH I Sbjct: 370 FNLDRHWRNARTHTLHDPVRWKVHAVGDYYLNGARPARHSWI 411