BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0054.p         (189 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1605 Non COG                                                       164   1e-40
RSc0025 Non COG                                                        88   1e-17
RSc1972 Non COG                                                        75   7e-14

>RSc1605 Non COG
          Length = 193

 Score =  164 bits (414), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/163 (56%), Positives = 111/163 (68%), Gaps = 4/163 (2%)

Query: 5   QDQFSAATKANLQAHLDLINSLTAKAFEGVEKIVELNLSATKATLEEAAAAAKQLAGAKD 64
           Q+Q +AA KANL+    L N    KAFEGVEK+VELNL   KATL E    +K+   AKD
Sbjct: 4   QEQIAAAQKANLETFFGLTN----KAFEGVEKLVELNLQVVKATLAENVEHSKKALSAKD 59

Query: 65  PQELLSLATAQAQPGAEKATAYGRHLAGIVSSTQAEFTKAAEAQIAETSRKLSALIDEIT 124
            QELL++ TA  QP AEK  AY RHL  I S TQ EF K AE QIAE SRKL ALID ++
Sbjct: 60  AQELLAVHTAAVQPLAEKVLAYNRHLYEIFSDTQTEFGKVAETQIAEGSRKLQALIDNVS 119

Query: 125 KNAPPGSEQAVSILKATLTNANAAYEQLSKNSKQAVETLEANL 167
           KNAP GSE AV+++K+ L+ AN AY+ + K +KQAVE  E+N 
Sbjct: 120 KNAPAGSESAVALVKSALSAANNAYDSVQKATKQAVELAESNF 162


>RSc0025 Non COG
          Length = 173

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 1/145 (0%)

Query: 20  LDLINSLTAKAFEGVEKIVELNLSATKATLEEAAAAAKQLAGAKDPQELLSLATAQAQPG 79
           LD +  LT  A   VEK+ EL     +A+LE++    K++  A+   EL +L +  +QP 
Sbjct: 15  LDALAELTGAALNSVEKLSELQFQTVRASLEDSTEQGKRVFDARSLHELTALQSEVSQP- 73

Query: 80  AEKATAYGRHLAGIVSSTQAEFTKAAEAQIAETSRKLSALIDEITKNAPPGSEQAVSILK 139
            EK  AYGRHL  I + T AE+ K A+ +  E  R   A +D+  K A PGSE A+S ++
Sbjct: 74  TEKLVAYGRHLYQIAAGTHAEWRKVAQTRANEQCRIALAWVDDYAKQAVPGSEPAISFMR 133

Query: 140 ATLTNANAAYEQLSKNSKQAVETLE 164
            T+T    A +     S  A+  ++
Sbjct: 134 TTITATQRACDAWQDASAHAIHLMD 158


>RSc1972 Non COG
          Length = 163

 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 6   DQFSAATKANLQAHLDLINSLTAKAFEGVEKIVELNLSATKATLEEAAAAAKQLAGAKDP 65
           +Q     +A L+A L    ++T +A +G+ +++ LNL A KA L E      ++AGA+D 
Sbjct: 5   EQLGFLHRAQLEAWL----AVTKEAVDGINRVIGLNLQALKAGLGETEQCLHEVAGAQDA 60

Query: 66  QELLSLATAQAQPGAEKATAYGRHLAGIVSSTQAEFTKAAEAQIAETSRKLSALIDEITK 125
            +  +      QP  E+ + Y R+L  I   TQ    +A +    E  R   A+ + +  
Sbjct: 61  GQWFTAHVRYLQPAGERVSGYTRNLVEIGVQTQNGIAQALQRHGDEVRRHWGAVTENLVD 120

Query: 126 NAPPGSEQAVSILKA 140
           +APPGSE  VS++KA
Sbjct: 121 SAPPGSEAVVSLMKA 135