BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0027.p (304 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3325 [K] COG1475 Predicted transcriptional regulators Rso Ral... 369 e-102 XF2281 [K] COG1475 Predicted transcriptional regulators Xfa Xyle... 261 2e-69 PA5562 [K] COG1475 Predicted transcriptional regulators Pae Pseu... 254 2e-67 NMA0508 [K] COG1475 Predicted transcriptional regulators NmA Nei... 242 6e-64 NMB1944 [K] COG1475 Predicted transcriptional regulators Nme Nei... 237 2e-62 >RSc3325 [K] COG1475 Predicted transcriptional regulators Rso Ralstonia solanacearum Length = 303 Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/300 (63%), Positives = 232/300 (77%), Gaps = 8/300 (2%) Query: 1 MATLPKKSKGLGRGLDALLGGSSDITEEAQAQAAAQGLPTVMPVTELQAGKYQPRTRMDE 60 M+TL K KGLGRGL+ALLG ++I E A+ G PTV+ + ++Q GKYQPRTRMDE Sbjct: 1 MSTL--KKKGLGRGLEALLGSPAEIVEVARQD----GAPTVLKLEQMQPGKYQPRTRMDE 54 Query: 61 GALNELAASIKEQGLLQPILIRAIGQKNGRDTYEIIAGERRFRAAKIAGLTEVPVLVRNV 120 GAL ELAASI+ QGL+QPIL+R + YEIIAGERRFRA+++AGLTEVPVLV++V Sbjct: 55 GALQELAASIRAQGLMQPILVRKVDSDGAAQKYEIIAGERRFRASRLAGLTEVPVLVKDV 114 Query: 121 DDQTTAAMALIENMQREDLNPLEEAQGIHRLITDFAFTHEQAAIAVGRSRSAVSNLLRLL 180 D+ AAMALIEN+QREDLNPLEEAQGI RLI +F FTHEQAA ++GRSRSAVSNLLRLL Sbjct: 115 PDEAAAAMALIENIQREDLNPLEEAQGIARLIREFQFTHEQAAESLGRSRSAVSNLLRLL 174 Query: 181 NLAKPVQTMLMAGDIDMGHARALLVVDSATQIQLANQIVAKRMSVRDAEKLVTRT--SAE 238 NLA+PVQTMLMAGD+DMGHAR LL VD A+QI LANQI+ KR+SVR+ EKLV T E Sbjct: 175 NLAQPVQTMLMAGDLDMGHARTLLAVDGASQITLANQIINKRLSVRETEKLVASTLKPFE 234 Query: 239 QAAKPREGKEKSRDIARLEEELSDLLATQVSIKTGARNKGQLIISFNDLDALDGVITRLR 298 ++ ++ + RD+ARLEEEL+D+L V IK A+ +GQL + F LD DG++ RLR Sbjct: 235 LKSQRQKNGQNGRDVARLEEELADMLGLPVQIKLAAKGRGQLTVQFGSLDEFDGLLARLR 294 >XF2281 [K] COG1475 Predicted transcriptional regulators Xfa Xylella fastidiosa 9a5c Length = 310 Score = 261 bits (666), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 157/304 (51%), Positives = 205/304 (67%), Gaps = 15/304 (4%) Query: 5 PKKSKGLGRGLDALLG---GSSDITEEAQAQAAAQGLPTVMPVTELQAGKYQPRTRMDEG 61 P K +GLGRGL+ALLG GSS A+ Q + L T+ +T+LQ KYQPR M E Sbjct: 7 PLKKRGLGRGLEALLGSKGGSSVPPTVAEGQLPGEVLRTLQ-ITQLQPSKYQPRREMSEP 65 Query: 62 ALNELAASIKEQGLLQPILIRAIGQKNGRDTYEIIAGERRFRAAKIAGLTEVPVLVRNVD 121 L ELA SIK QG++QPI++R + D +EI+AGERR+RA+++AGLTEVPVLVR +D Sbjct: 66 KLAELADSIKAQGVIQPIIVRELDV----DMFEIVAGERRWRASQLAGLTEVPVLVRELD 121 Query: 122 DQTTAAMALIENMQREDLNPLEEAQGIHRLITDFAFTHEQAAIAVGRSRSAVSNLLRLLN 181 D+T AMALIEN+QREDLNPLEEAQ + RLI +F+ TH +AA AVGRSR+AVSNLLRLL Sbjct: 122 DRTVVAMALIENIQREDLNPLEEAQALQRLIDEFSLTHAEAAEAVGRSRAAVSNLLRLLE 181 Query: 182 LAKPVQTMLMAGDIDMGHARALLVVDSATQIQLANQIVAKRMSVRDAEKLVTRTSAEQAA 241 L ++T+L + ++MGHARALL + +LA + + SVR+ E + +A + Sbjct: 182 LPLGIRTLLQSRRLEMGHARALLTLAPELADKLAKEAADQGWSVREVEHRAQQFAAGKVP 241 Query: 242 KPREGKEKS-------RDIARLEEELSDLLATQVSIKTGARNKGQLIISFNDLDALDGVI 294 R+ K KS DIA LE ELS+ L T+V+I G KG+L+I + DLD LDGV+ Sbjct: 242 DIRDKKSKSPASAPAQPDIASLETELSEHLGTKVAINHGRAGKGKLVIHYTDLDVLDGVL 301 Query: 295 TRLR 298 RLR Sbjct: 302 ERLR 305 >PA5562 [K] COG1475 Predicted transcriptional regulators Pae Pseudomonas aeruginosa Length = 290 Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 145/292 (49%), Positives = 197/292 (67%), Gaps = 5/292 (1%) Query: 7 KSKGLGRGLDALLGGSSDITEEAQAQAAAQGLPTVMPVTELQAGKYQPRTRMDEGALNEL 66 K +GLGRGLDALLGGSS + +A A + +P+ +Q GKYQPR MD AL EL Sbjct: 4 KKRGLGRGLDALLGGSSPAKLQEEAVQADRRELQQIPLDLMQRGKYQPRRDMDPQALEEL 63 Query: 67 AASIKEQGLLQPILIRAIGQKNGRDTYEIIAGERRFRAAKIAGLTEVPVLVRNVDDQTTA 126 A SIK QG++QPI++R I NGR YEIIAGERR+RA++ AGL ++P LVR+V D+ Sbjct: 64 AQSIKAQGVMQPIVVRPIA--NGR--YEIIAGERRWRASQQAGLEKIPALVRDVPDEAAI 119 Query: 127 AMALIENMQREDLNPLEEAQGIHRLITDFAFTHEQAAIAVGRSRSAVSNLLRLLNLAKPV 186 AMALIEN+QREDLNP+EEA + RL +F T +Q A AVG+SR+ ++NLLRL+ L + + Sbjct: 120 AMALIENIQREDLNPIEEAAALQRLQQEFQLTQQQVAEAVGKSRATITNLLRLIGLPEEI 179 Query: 187 QTMLMAGDIDMGHARALLVVDSATQIQLANQIVAKRMSVRDAEKLVTRTSAEQAAKPREG 246 +T+L GD++MGHARALL + + Q++ A +VA ++VR E LV R KP Sbjct: 180 KTLLSHGDLEMGHARALLGLPAERQVEGARHVVAHGLTVRQTEALV-RQWTHAPGKPAGP 238 Query: 247 KEKSRDIARLEEELSDLLATQVSIKTGARNKGQLIISFNDLDALDGVITRLR 298 + DIARLE+ L++ L V I+ G + KGQL+I ++ LD L GV+ +R Sbjct: 239 VKSDPDIARLEQRLAERLGASVQIRHGQKGKGQLVIRYSSLDELQGVLAHIR 290 >NMA0508 [K] COG1475 Predicted transcriptional regulators NmA Neisseria meningitidis Z2491 Length = 286 Score = 242 bits (618), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 132/294 (44%), Positives = 191/294 (64%), Gaps = 14/294 (4%) Query: 4 LPKKSKGLGRGLDALLGGSSDITEEAQAQAAAQGLPTVMPVTELQAGKYQPRTRMDEGAL 63 + K GLGRGLD+LL +D ++ L TV V +++ G+YQ R ++D+ AL Sbjct: 1 MAKVKGGLGRGLDSLLANGAD-------NSSGDRLTTVA-VKDIRPGRYQARVQIDDEAL 52 Query: 64 NELAASIKEQGLLQPILIRAIGQKNGRDTYEIIAGERRFRAAKIAGLTEVPVLVRNVDDQ 123 ELA SIK QG++QP+++R ++G YE+IAGERR+RAA+IAGLTE+P +++ + D+ Sbjct: 53 QELADSIKAQGVIQPVIVR----EHGLSRYELIAGERRWRAAQIAGLTEIPAVIKTISDE 108 Query: 124 TTAAMALIENMQREDLNPLEEAQGIHRLITDFAFTHEQAAIAVGRSRSAVSNLLRLLNLA 183 T AM LIEN+QRE+LNP+EEAQG+ RL +F THE A AVG+SRSA+SN LRLL+L Sbjct: 109 TALAMGLIENLQRENLNPIEEAQGLKRLADEFGLTHETIAQAVGKSRSAISNSLRLLSLP 168 Query: 184 KPVQTMLMAGDIDMGHARALLVVDSATQIQLANQIVAKRMSVRDAEKLVTRTSAEQAAKP 243 +PVQ ML ++MGHARALL + Q++LA + V SVR+ E+ +A Q +P Sbjct: 169 EPVQEMLYQRRLEMGHARALLTLPVVEQLELAQKAVKNGWSVREVER--RSQAALQNKRP 226 Query: 244 REGKEKSRDIARLEEELSDLLATQVSIKTGARNKGQLIISFNDLDALDGVITRL 297 K + DI RL + L++ L IKT KG++I+ F+ + D ++ +L Sbjct: 227 EPKKTAAADIGRLNDLLTEKLGVNAEIKTANHKKGKIILHFDTPETFDHILKQL 280 >NMB1944 [K] COG1475 Predicted transcriptional regulators Nme Neisseria meningitidis MC58 Length = 286 Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 129/294 (43%), Positives = 190/294 (64%), Gaps = 14/294 (4%) Query: 4 LPKKSKGLGRGLDALLGGSSDITEEAQAQAAAQGLPTVMPVTELQAGKYQPRTRMDEGAL 63 + K GLGRGLD+LL +D ++ L TV V +++ G+YQ R ++D+ AL Sbjct: 1 MAKVKGGLGRGLDSLLANGAD-------NSSGDRLTTVA-VKDIRPGRYQARVQIDDEAL 52 Query: 64 NELAASIKEQGLLQPILIRAIGQKNGRDTYEIIAGERRFRAAKIAGLTEVPVLVRNVDDQ 123 ELA SIK QG++QP+++R ++G YE+IAGERR+RAA+IAGLTE+P +++ + D+ Sbjct: 53 QELADSIKAQGVIQPVIVR----EHGLSRYELIAGERRWRAAQIAGLTEIPAVIKTISDE 108 Query: 124 TTAAMALIENMQREDLNPLEEAQGIHRLITDFAFTHEQAAIAVGRSRSAVSNLLRLLNLA 183 T AM LIEN+QRE+LNP+EEAQG+ RL +F THE A AVG+SRSA+SN LRLL+L Sbjct: 109 TALAMGLIENLQRENLNPIEEAQGLKRLADEFGLTHETIAQAVGKSRSAISNSLRLLSLP 168 Query: 184 KPVQTMLMAGDIDMGHARALLVVDSATQIQLANQIVAKRMSVRDAEKLVTRTSAEQAAKP 243 +PVQ ML ++MGHARALL + Q++LA + V SVR+ E+ +A Q +P Sbjct: 169 EPVQEMLYQRRLEMGHARALLTLPVVEQLELAQKAVKNGWSVREVER--RSQAALQNKRP 226 Query: 244 REGKEKSRDIARLEEELSDLLATQVSIKTGARNKGQLIISFNDLDALDGVITRL 297 K + DI RL + L++ L +KT KG++++ F+ + ++ +L Sbjct: 227 EPKKTAAADIGRLNDLLTEKLGVNAEVKTANHKKGRIVLYFDTPETFGHLLEQL 280