BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0014.p (256 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3344 [E] COG0411 ABC-type branched-chain amino acid transport... 409 e-114 SMc03120 [E] COG0411 ABC-type branched-chain amino acid transpor... 289 4e-78 BMEII0343 [E] COG0411 ABC-type branched-chain amino acid transpo... 287 1e-77 AGl1459 [E] COG0411 ABC-type branched-chain amino acid transport... 283 3e-76 RSc1753 [E] COG0411 ABC-type branched-chain amino acid transport... 213 3e-55 >RSc3344 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 256 Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust. Identities = 193/252 (76%), Positives = 225/252 (89%) Query: 3 DVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQI 62 D+ILETR LTK FKGFTAVS VNL++ RG IHALIGPNGAGKTTCFNLLTKFLVPT G I Sbjct: 4 DIILETRGLTKAFKGFTAVSDVNLRVRRGSIHALIGPNGAGKTTCFNLLTKFLVPTRGTI 63 Query: 63 LFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESL 122 LFNG DIT + PAQIAR+G+IRSFQISAVFPH+SVLENVRIGLQR+LGT++ FW++ ++L Sbjct: 64 LFNGVDITPERPAQIARRGVIRSFQISAVFPHLSVLENVRIGLQRQLGTAYAFWRSEKTL 123 Query: 123 KQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHE 182 L++RAMQLL++V LT FA T TV+LPYGRKRALEIATTLAMEPELMLLDEPTQGMGHE Sbjct: 124 AVLNDRAMQLLDQVGLTPFAGTVTVELPYGRKRALEIATTLAMEPELMLLDEPTQGMGHE 183 Query: 183 DVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVME 242 DVDRVT LI++V+ GRTILMVEHNM+V++ I D+I+VLQRG +LAEG YE+VS+NPQVME Sbjct: 184 DVDRVTELIQRVAEGRTILMVEHNMNVVSSIADKITVLQRGQILAEGPYEDVSKNPQVME 243 Query: 243 AYMGSTSAELQG 254 AYMG+ A L+G Sbjct: 244 AYMGTADAALEG 255 >SMc03120 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Sme Sinorhizobium meliloti Length = 262 Score = 289 bits (740), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 139/247 (56%), Positives = 177/247 (71%) Query: 4 VILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQIL 63 V+L R L ++F GFTAV V+L + +HALIGPNGAGKTT FNLLTKFL PT G I Sbjct: 14 VVLSARGLRRDFGGFTAVKDVDLDVHHARVHALIGPNGAGKTTVFNLLTKFLQPTHGTIT 73 Query: 64 FNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESLK 123 G DIT AP ++AR G++RSFQISAVFPH++VL+NVR+ LQR + FWK+ SL Sbjct: 74 LLGEDITRTAPDKVARMGLVRSFQISAVFPHLTVLDNVRVALQRPNRLATQFWKSLSSLD 133 Query: 124 QLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHED 183 L+ +A QL+ V L A+ DL YGRKR LEIATTLA+EP+++LLDEP GMGHED Sbjct: 134 TLNGKAEQLIRSVGLDKEANAVAADLSYGRKRVLEIATTLALEPKVLLLDEPMAGMGHED 193 Query: 184 VDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVMEA 243 V V +I++V+ R +LMVEHN+SV+A +C ++VLQRG +LAEG Y VS +P+V A Sbjct: 194 VGMVAEIIREVARERAVLMVEHNLSVVATLCHHVTVLQRGEILAEGDYATVSEDPRVRTA 253 Query: 244 YMGSTSA 250 YMG+ A Sbjct: 254 YMGTEEA 260 >BMEII0343 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Bme Brucella melitensis Length = 272 Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 136/244 (55%), Positives = 175/244 (71%) Query: 4 VILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQIL 63 ++L R L K F GF AV V+L +E +HALIGPNGAGKTT FNLLTKFL PTSG+I Sbjct: 26 IVLSARGLGKSFGGFHAVKNVDLDVEHARVHALIGPNGAGKTTVFNLLTKFLQPTSGEIT 85 Query: 64 FNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESLK 123 G IT PA++AR+G++RSFQISA FPH++VLENV++ LQR G + FW++ +L Sbjct: 86 LLGETITKTDPARVARKGLVRSFQISATFPHLTVLENVKVALQRPNGLATQFWRSLSALD 145 Query: 124 QLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHED 183 LD +A++LLE V L H DL YGRKRALEIATTLA++P+++LLDEP GMGHED Sbjct: 146 WLDAQAVELLERVGLADARHALAADLSYGRKRALEIATTLALDPKVLLLDEPLAGMGHED 205 Query: 184 VDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVMEA 243 V + ALI V+ R +LMVEHN+ V+A I ++VLQRG +LA G Y VS++ +V A Sbjct: 206 VHTIAALITDVAKDRAVLMVEHNLKVVADIAHHVTVLQRGEILASGDYATVSKDERVRTA 265 Query: 244 YMGS 247 YMG+ Sbjct: 266 YMGT 269 >AGl1459 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 283 bits (723), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 138/247 (55%), Positives = 172/247 (69%) Query: 4 VILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQIL 63 V+L R LTK F F AV V+L + +HALIGPNGAGKTT FNLLTKFL PT G I Sbjct: 22 VVLSARGLTKTFGAFAAVKNVDLDVHHARVHALIGPNGAGKTTVFNLLTKFLQPTGGAIT 81 Query: 64 FNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESLK 123 F G DIT P ++AR G++RSFQISAVFPH++VLENVR+ LQR + FW SL Sbjct: 82 FMGTDITKTPPDKVARLGLVRSFQISAVFPHLTVLENVRVALQRPNSLATQFWLPLSSLD 141 Query: 124 QLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHED 183 +L+ RA +L+ V LT + DL YGRKR LEIATTLA++P+++LLDEP GMG ED Sbjct: 142 RLNARAEELISMVGLTREKNALAADLSYGRKRVLEIATTLALDPKVLLLDEPMAGMGGED 201 Query: 184 VDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVMEA 243 V V LI++V+ R +LMVEHN+ V+A IC ++VLQRG +LAEG Y VS +P+V A Sbjct: 202 VSHVAELIREVAKTRAVLMVEHNLKVVADICHHVTVLQRGEILAEGDYAAVSADPRVRTA 261 Query: 244 YMGSTSA 250 YMG+ A Sbjct: 262 YMGTEEA 268 >RSc1753 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 266 Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 112/259 (43%), Positives = 156/259 (60%), Gaps = 8/259 (3%) Query: 6 LETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQILFN 65 LE R++ K F + VNL I RG HALIGPNGAGK+T FNL++ P++G + N Sbjct: 8 LELRDVRKRFGATEIIRGVNLTIGRGERHALIGPNGAGKSTTFNLISGRFAPSAGSVRLN 67 Query: 66 GRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESLKQL 125 G +I AP +I R+G+ RSFQI+ +F +SV EN+R + LG + FW L+ Sbjct: 68 GEEIAGLAPYEINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYQYSFWHRLAELRDA 127 Query: 126 DERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHEDVD 185 ERA +LE++ LT L Y +RALEI T+A +++LLDEPT GM + D Sbjct: 128 RERAEAVLEQIGLTHRHDAAAGTLTYAEQRALEIGITIAGGADVILLDEPTAGMSRSESD 187 Query: 186 RVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVMEAYM 245 LI+KV+ G+T++MVEH+MSV+ G+ DRISVL G ++A + E + N +V EAY+ Sbjct: 188 HAVDLIRKVTVGKTLVMVEHDMSVVFGLADRISVLVYGEVIATDTPEAIRNNRRVKEAYL 247 Query: 246 GST--------SAELQGAH 256 G+T AE GAH Sbjct: 248 GTTLDANDAANEAESAGAH 266