BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0006.p         (196 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2551 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...   132   6e-31
PA5189 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...   121   1e-27
AGpA273 [K] COG0583 Transcriptional regulator Atu Agrobacterium ...   112   5e-25
RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...   111   9e-25
PA1399 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...   111   1e-24

>PA2551 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 310

 Score =  132 bits (331), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 104/190 (54%), Gaps = 12/190 (6%)

Query: 1   MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60
           M+   +DLNL  VFDA+ TE NLTRA  ++ +TQPAVSNAL RLR+T ND L +RTA G+
Sbjct: 1   MNLNKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALSRLRETFNDPLFVRTAQGM 60

Query: 61  KPTPRAEELWPTVRRALSELE-AVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIM 119
            PTP A+ +   VR AL  L  +V    SFD  +A  T+R++M D T A+ LP L + + 
Sbjct: 61  VPTPMAQNIIGPVRNALQLLRVSVQESRSFDPQQANKTYRISMTDLTEAVILPPLFQRLR 120

Query: 120 RDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTG 179
           R AP + I       R+    L  G +D AV           D       Q+ H +L   
Sbjct: 121 RLAPNVHIESFLAKRRETTKELAAGRLDFAV-----------DAPLNTDPQVRHVKLMED 169

Query: 180 QYVCVMHKSH 189
           +YVC M + H
Sbjct: 170 RYVCAMRRGH 179


>PA5189 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 302

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 1   MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60
           M+  T DLNLLRV DA++ E+N++RAA  LA++QPAVSNAL RLR+ L+D L++R    +
Sbjct: 1   MNIQTFDLNLLRVLDALLRERNVSRAAERLALSQPAVSNALNRLRELLDDPLLVRAGRAM 60

Query: 61  KPTPRAEELWPTVRRALSELEAVIA-PESFDISRAQNTFRMAMVDATAALWLPSLVRTIM 119
           +PTPRA  L   +R AL ++E  +   E FD  R++  F +A+ D    + +P+L+R + 
Sbjct: 61  QPTPRALALEAPIRAALRQIEQSLGDGEGFDPGRSRQRFTVAVTDYVELICMPALMRRLS 120

Query: 120 RDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQL 160
             AP I I +  LT   P   L +G++DL +G F  V A+ 
Sbjct: 121 ERAPGISIAIQHLTPTLPAEALDKGELDLVLGRFENVPARF 161


>AGpA273 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 325

 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 109/191 (57%), Gaps = 13/191 (6%)

Query: 1   MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60
           M+   +DLNLL  FDA+ +E+N+TRA + +  TQPA+S AL RLR  L D+L +R  +G+
Sbjct: 8   MNLHGIDLNLLVAFDALNSERNVTRAGSRIGRTQPAMSAALSRLRFLLRDELFVRGPNGL 67

Query: 61  KPTPRAEELWPTVRRALSELEAVIA-PESFDISRAQNTFRMAMVDATAALWLPSLVRTIM 119
           +PTPRA EL   +  AL E++  +   + FD  ++  +F +A+     ++ LP L+  + 
Sbjct: 68  QPTPRAVELAEPISLALREIQRTLQFTQGFDPDKSTISFSIAVSAHAGSVILPRLLSLLE 127

Query: 120 RDAPRIKIRMMPLTTRDPRAMLL-RGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYT 178
             AP I I++   ++RD    LL  G +DL VG  P  T           S+I  ARL+ 
Sbjct: 128 EKAPGIDIKVRDYSSRDDAVSLLDSGGVDLTVGIPPTPT-----------SRILSARLFQ 176

Query: 179 GQYVCVMHKSH 189
            ++VC++ K H
Sbjct: 177 ERFVCILRKDH 187


>RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 300

 Score =  111 bits (278), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 102/190 (53%), Gaps = 12/190 (6%)

Query: 1   MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60
           M    +DLNLL VF+ ++ ++ ++  A  L +TQPA+SNAL RLR  L D+L +RT+ G+
Sbjct: 1   MELQDIDLNLLVVFNELLRQRRVSAVAETLGITQPAISNALNRLRKLLGDELFVRTSKGM 60

Query: 61  KPTPRAEELWPTVRRALSEL-EAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIM 119
            PTP AE L   +  AL  +  ++ A   F+ + +   F +AM D     +LP+L+R + 
Sbjct: 61  IPTPFAETLAEPIAYALGAIYNSLNATSRFEPATSTRAFTIAMTDIGEIYFLPTLMRRLA 120

Query: 120 RDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTG 179
           RDAP + +  +       R  +  G +DLA+GF P +           KS     RL+  
Sbjct: 121 RDAPGVTVSTVRNHADTLRDEMEAGRVDLAIGFLPDL-----------KSGFFQRRLFRQ 169

Query: 180 QYVCVMHKSH 189
           +YVC+  K H
Sbjct: 170 RYVCLFRKGH 179


>PA1399 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 306

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/146 (45%), Positives = 90/146 (61%), Gaps = 1/146 (0%)

Query: 6   LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPTPR 65
            DLNL RVF+ V  E+NLTRAA LL ++Q AVS+AL RLRD L D L +R   GV PTP 
Sbjct: 13  FDLNLFRVFEVVYRERNLTRAAGLLHLSQSAVSHALARLRDQLGDPLFVRQGRGVAPTPL 72

Query: 66  AEELWPTVRRALSELE-AVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMRDAPR 124
           AE L P +  AL+ L  ++   ++FD  R   TF++ M +    L LP+++  + + APR
Sbjct: 73  AERLAPGIHDALAGLHRSMNRCQTFDPRRDARTFQLNMPEQLEPLVLPAILAHLRQAAPR 132

Query: 125 IKIRMMPLTTRDPRAMLLRGDIDLAV 150
           I+IR   L   D +A L  G IDLA+
Sbjct: 133 IEIRCNSLHWADLKAELGAGRIDLAI 158