BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0119.p (212 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2980 [S] COG2717 Predicted membrane protein Rso Ralstonia sol... 213 3e-55 CC2747 [S] COG2717 Predicted membrane protein Ccr Caulobacter vi... 149 3e-36 BMEII0304 [S] COG2717 Predicted membrane protein Bme Brucella me... 143 3e-34 AGc3512 [S] COG2717 Predicted membrane protein Atu Agrobacterium... 132 6e-31 DR2537 [S] COG2717 Predicted membrane protein Dra Deinococcus ra... 131 1e-30 >RSc2980 [S] COG2717 Predicted membrane protein Rso Ralstonia solanacearum Length = 217 Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 118/205 (57%), Positives = 143/205 (69%), Gaps = 5/205 (2%) Query: 5 PAALRNLKPRTVTVLWWLFLALACLPLLRLVMLGFTGGLGANPLEFITHSTGDWTLYLFC 64 P+ L R V + WL LA +P LRLV+LG T GANPLEF+T STG WTL L C Sbjct: 3 PSMLPPKSLRAVRIAVWL---LALVPFLRLVVLGATDRYGANPLEFVTRSTGTWTLVLLC 59 Query: 65 LTLAVTPLRKLTGLNWLVRMRRMLGLMAFFYLCLHFTTFVWFDHFFDLGEIWKDILKRPF 124 TLAVTPLR+LTG+NWL+R+RRMLGL FFY LHF ++ D D + KDI KRPF Sbjct: 60 CTLAVTPLRRLTGMNWLIRIRRMLGLYTFFYGTLHFLIWLLVDRGLDPASMVKDIAKRPF 119 Query: 125 ITVGVIALLLSIPLALTSTNGMVRRLGGKRWQALHRLVYLIVPLGVLHYWWDKAGKNLIA 184 ITVG A +L IPLA TSTN MVRRLGG+RWQ LHRLVY+ LG+LHYWW KAGK+ A Sbjct: 120 ITVGFAAFVLMIPLAATSTNAMVRRLGGRRWQWLHRLVYVTGVLGILHYWWHKAGKHDFA 179 Query: 185 QPLLFAVLVGLMLVLRL--VWRKGR 207 + ++A ++ ++L LR+ VWR R Sbjct: 180 EVSIYAAVMAVLLGLRVWWVWRGAR 204 >CC2747 [S] COG2717 Predicted membrane protein Ccr Caulobacter vibrioides Length = 253 Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/189 (48%), Positives = 117/189 (61%), Gaps = 6/189 (3%) Query: 26 LACL-PLLRLVMLGFTGGLGANPLEFITHSTGDWTLYLFCLTLAVTPLRKLTGLNWLVRM 84 LAC PL L G+ G LGANP++ + G+W L L + LA+TP ++ + LVR Sbjct: 67 LACFAPLAWLAWRGYAGELGANPIDKLIRELGEWGLRLLLVGLAITPAARILKMPRLVRF 126 Query: 85 RRMLGLMAFFYLCLHFTTFVWFDHFFDLGEIWKDILKRPFITVGVIALLLSIPLALTSTN 144 RR +GL AF Y+ LH +V D FFD ++WKDILKRPFIT+G++ +L IPLA+TSTN Sbjct: 127 RRTVGLFAFAYVALHLLAYVGIDLFFDWNQLWKDILKRPFITLGMLGFMLLIPLAVTSTN 186 Query: 145 GMVRRLGGKRWQALHRLVYLIVPLGVLHYWWDKAGKNLIAQPLLF-AVLVGLMLVLRLVW 203 G V R+G W LHRLVYLIVPLGV HY+ + P+++ AV V LML VW Sbjct: 187 GWVIRMGRAAWSRLHRLVYLIVPLGVAHYYLLVKADH--RPPIIYGAVFVALMLW--RVW 242 Query: 204 RKGRAARPS 212 R A S Sbjct: 243 EGRRTASKS 251 >BMEII0304 [S] COG2717 Predicted membrane protein Bme Brucella melitensis Length = 220 Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/212 (40%), Positives = 126/212 (59%), Gaps = 4/212 (1%) Query: 1 MQLAPAALRNLKPRTVTVLWWLFLALACLPLLRLVMLGFTGGLGANPLEFITHSTGDWTL 60 M A + PR WL +P + LG TG LGA+P++ H G W L Sbjct: 1 MAAATGTRKKKTPRPGQWKLWLLYTAGFVPAVWTFYLGATGQLGADPVKTFEHLLGLWAL 60 Query: 61 YLFCLTLAVTPLRKLTGLNWLVRMRRMLGLMAFFYLCLHFTTFVWFDHFFDLGEIWKDIL 120 LTL VTP+R LTG+ L+R RR LGL+AF+Y +HFTT++ D +L I DI+ Sbjct: 61 RFLILTLLVTPMRDLTGIT-LLRYRRALGLLAFYYALMHFTTYMVLDQGLNLSAIITDIV 119 Query: 121 KRPFITVGVIALLLSIPLALTSTNGMVRRLGGKRWQALHRLVYLIVPLGVLHYWWDKAGK 180 +RPFIT+G+I+L L +PLALTS N +R+L G+RW +LH+LVY+ + +H+ + K Sbjct: 120 RRPFITIGMISLALLVPLALTSNNWSIRKL-GRRWSSLHKLVYIAIAGSAVHFL--MSVK 176 Query: 181 NLIAQPLLFAVLVGLMLVLRLVWRKGRAARPS 212 + A+P+++A +V +L+ RL R +P+ Sbjct: 177 SWPAEPVIYAAIVAALLLWRLARPYLRTRKPA 208 >AGc3512 [S] COG2717 Predicted membrane protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 215 Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/211 (40%), Positives = 120/211 (56%), Gaps = 10/211 (4%) Query: 7 ALRNLKPRTVTVLWWLFLALACLPLLRLVMLGFTGGLGANPLEFITHSTGDWTLYLFCLT 66 +L +L R W + P L L TGGLG NP++ H G W L CL Sbjct: 6 SLPSLPKRYQPAAIWSLYVIGLCPGLWYFYLAATGGLGFNPVKDFEHLLGIWALRFLCLG 65 Query: 67 LAVTPLRKLTGLNWLVRMRRMLGLMAFFYLCLHFTTFVWFDHFFDLGEIWKDILKRPFIT 126 L VTPLR L +N L+ RR LGL+AF+Y+ HFT ++ D LG I DILKRP+I Sbjct: 66 LLVTPLRDLFNVN-LIAYRRALGLIAFYYVLAHFTVYLVLDRGLILGSIAGDILKRPYIM 124 Query: 127 VGVIALLLSIPLALTSTNGMVRRLGGKRWQALHRLVYLIVPLGVLHYWWDKAGKNLIAQP 186 +G+ L++ IPLALTS +RRL G RW LH+LVYL++ +GVLH+ A K++ +P Sbjct: 125 LGMAGLIILIPLALTSNRWSIRRL-GSRWNTLHKLVYLVLIVGVLHFVL--ARKSITLEP 181 Query: 187 LLFAVLVGLMLVLRLV------WRKGRAARP 211 + + + ++L RLV ++ + ARP Sbjct: 182 VFYISTMVVLLGYRLVRPSIMTMKRNKRARP 212 >DR2537 [S] COG2717 Predicted membrane protein Dra Deinococcus radiodurans Length = 202 Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/147 (52%), Positives = 93/147 (63%), Gaps = 1/147 (0%) Query: 29 LPLLRLVMLGFTGGLGANPLEFITHSTGDWTLYLFCLTLAVTPLRKLTGLNWLVRMRRML 88 LP + L+ +GGLGANP++ TH TG L + L+LA TP R G W R+R+ L Sbjct: 21 LPTVFLLWDALSGGLGANPVKQATHQTGQLALIVLTLSLACTPARVWLGWTWAARIRKAL 80 Query: 89 GLMAFFYLCLHFTTFVWFDHFFDLGEIWKDILKRPFITVGVIALLLSIPLALTSTNGMVR 148 GL+A FY LHF ++ F LG IW+D+ +RPFIT G ALLL +PL LTS G VR Sbjct: 81 GLLAAFYAVLHFGIYL-RGQDFSLGRIWEDVTERPFITSGFAALLLLLPLVLTSGKGSVR 139 Query: 149 RLGGKRWQALHRLVYLIVPLGVLHYWW 175 RLG RW LHRLVYL LG LHYWW Sbjct: 140 RLGFARWTLLHRLVYLAAALGALHYWW 166