BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0118.p         (229 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll4530 [O] COG0225 Peptide methionine sulfoxide reductase Mlo M...   261   1e-69
slr1795 [O] COG0225 Peptide methionine sulfoxide reductase Syn S...   198   6e-51
DR1849 [O] COG0225 Peptide methionine sulfoxide reductase Dra De...   162   4e-40
RSc0764 [O] COG0225 Peptide methionine sulfoxide reductase Rso R...   161   1e-39
SSO1503 [O] COG0225 Peptide methionine sulfoxide reductase Sso S...   155   5e-38

>mll4530 [O] COG0225 Peptide methionine sulfoxide reductase Mlo
           Mesorhizobium loti
          Length = 195

 Score =  261 bits (667), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 117/183 (63%), Positives = 144/183 (78%)

Query: 45  TETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYD 104
           +ET + AGGCFWGVQGVFQH +GV KAVSGY GG  D A Y  V +G TGHAE+V++TYD
Sbjct: 9   SETAIFAGGCFWGVQGVFQHVKGVSKAVSGYTGGAKDDAVYETVGTGRTGHAESVEITYD 68

Query: 105 PRKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAK 164
           P K+++GQLLQ+YFSVAH+PTQLN QGPD GTQYRS IF  N+ QK+ AQ+YI QL+ AK
Sbjct: 69  PSKVTYGQLLQVYFSVAHNPTQLNFQGPDSGTQYRSTIFAENDTQKQIAQSYIDQLDKAK 128

Query: 165 VYGAPIVTQVTALQGFYAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRADPV 224
           +Y APIVT +   + FY AE+YHQD+ TL+P  PYI YNDLPK+ NL++++PALY   PV
Sbjct: 129 LYPAPIVTTIETGKTFYPAENYHQDFLTLNPTYPYIVYNDLPKVANLKQLFPALYSEKPV 188

Query: 225 LVF 227
           LV 
Sbjct: 189 LVL 191


>slr1795 [O] COG0225 Peptide methionine sulfoxide reductase Syn
           Synechocystis
          Length = 214

 Score =  198 bits (504), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 120/177 (67%)

Query: 45  TETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYD 104
           TE  V AGGCFWG++ +F+  +GV    +GY+GG   TA YA VS G T HAE++++ YD
Sbjct: 36  TEKAVFAGGCFWGLEAMFEEVRGVKDVQTGYSGGTEATANYARVSGGGTDHAESIEIVYD 95

Query: 105 PRKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAK 164
           P ++S+G+LL+I+FSV HDPTQ+NRQG DQG QYRSAIF    +QK+ AQAYI QL  ++
Sbjct: 96  PAQVSYGELLKIFFSVGHDPTQVNRQGVDQGRQYRSAIFATTPEQKQVAQAYIDQLEESQ 155

Query: 165 VYGAPIVTQVTALQGFYAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRA 221
            +   I T+V     FY AEDYHQD+   +P  PY+  +DLPK+   ++ Y    +A
Sbjct: 156 AFDQAIATEVNDFDAFYPAEDYHQDFVQRNPAHPYVLVHDLPKLRKFRQQYSDKLKA 212


>DR1849 [O] COG0225 Peptide methionine sulfoxide reductase Dra Deinococcus
           radiodurans
          Length = 206

 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/173 (47%), Positives = 105/173 (60%), Gaps = 1/173 (0%)

Query: 43  APTETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVT 102
           A  E  + AGGCFW  + V Q  +GV K  SGY GG      Y  V  G TGHAEAV+VT
Sbjct: 30  AAQEQAIFAGGCFWCTEAVMQDLRGVQKVESGYIGGTVPNPDYRSVCGGQTGHAEAVRVT 89

Query: 103 YDPRKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNA 162
           +DP +IS+  LL ++F+  HDPT LNRQG D GTQYRSA+F   ++Q++ A+  I QL  
Sbjct: 90  FDPNQISYRDLLGLFFAT-HDPTSLNRQGADVGTQYRSALFPLTQEQEQTAREMIEQLGT 148

Query: 163 AKVYGAPIVTQVTALQGFYAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMY 215
             V+G PIVT +     FY AEDYHQ+Y   +P Q Y      PK+  L++ Y
Sbjct: 149 EDVFGRPIVTSIEPASTFYVAEDYHQNYYKNNPGQGYCMAVISPKVAKLRQYY 201


>RSc0764 [O] COG0225 Peptide methionine sulfoxide reductase Rso Ralstonia
           solanacearum
          Length = 191

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 106/174 (60%), Gaps = 5/174 (2%)

Query: 46  ETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDP 105
           ET VL GGCFW  + VFQ  QGV   VSGYAGG  +  TY  V  G TGHAE V+V +DP
Sbjct: 13  ETAVLGGGCFWCTEAVFQQVQGVHSVVSGYAGGHLERPTYRAVCGGDTGHAEVVRVEFDP 72

Query: 106 RKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKV 165
             I + ++L I+F+  HDPT L RQG D G QYRSA+F  + +Q   A A I  L+AA V
Sbjct: 73  AVIPYREILDIFFAT-HDPTTLERQGNDIGPQYRSAVFAQSPEQFAEAGATIRALSAANV 131

Query: 166 YGAPIVTQVTALQG----FYAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMY 215
           + APIVT+V    G    F+ AED HQ+Y   HP Q Y A+   PK+   ++ +
Sbjct: 132 FDAPIVTEVVDASGGKVPFWQAEDEHQNYFRDHPAQGYCAFVISPKVAKFRERF 185


>SSO1503 [O] COG0225 Peptide methionine sulfoxide reductase Sso Sulfolobus
           solfataricus
          Length = 177

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 102/171 (59%), Gaps = 3/171 (1%)

Query: 46  ETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDP 105
           E   L GGCFW  + V++  +GV+    GY+GG     TY  V + +TGHAE VQ+T+D 
Sbjct: 2   EVATLGGGCFWCTEAVYKRVKGVISVKPGYSGGHVPNPTYEDVCTDTTGHAEVVQITFDS 61

Query: 106 RKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKV 165
             IS+ ++L+I+F + HDPT LNRQG D GTQYRS I   NE+Q++ A+  I ++   K 
Sbjct: 62  SIISYREILEIFFEI-HDPTTLNRQGNDVGTQYRSIILYHNEEQRKIAEEMIREVE--KR 118

Query: 166 YGAPIVTQVTALQGFYAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYP 216
            G  +VT++   + FY AEDYH D+   H   PY      PK+    K++P
Sbjct: 119 IGKKVVTELKPFEVFYEAEDYHHDFYDKHKYNPYCRLVISPKVKKFMKLFP 169