BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0112.p (318 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM2692 [M] COG0845 Membrane-fusion protein Sty Salmonella typhi... 112 2e-24 PA1877 [M] COG0845 Membrane-fusion protein Pae Pseudomonas aerug... 108 1e-23 Z0635 [M] COG0845 Membrane-fusion protein EcZ Escherichia coli O... 107 5e-23 ECs0544 [M] COG0845 Membrane-fusion protein Ecs Escherichia coli... 107 5e-23 RSp1183 [M] COG0845 Membrane-fusion protein Rso Ralstonia solana... 93 9e-19 >STM2692 [M] COG0845 Membrane-fusion protein Sty Salmonella typhimurium LT2 Length = 387 Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 114/194 (58%) Query: 24 VLVLLLWAAVSQIDQVTRAQGQVIAVSRTQSVQAPDGGPVKQILVKEGEAVKQGQLLMVL 83 L+L +WA ++D+V+ G+VI SR Q +Q+ DGG + Q+ V+EG+ V+ Q++ L Sbjct: 26 FLILGIWAWFGRLDEVSTGNGKVIPSSREQVLQSLDGGILAQLTVREGDRVQANQIVARL 85 Query: 84 EQDRVQTSLNDSRAKVAALRISLARLRAEVYGHPLNFEPDLLDYKEYIANQKDLYVKRKI 143 + R+ +++ +S AK A S ARL AEV PL F +L + + IA + LY R+ Sbjct: 86 DPTRLASNVGESAAKYRASLASSARLTAEVNDLPLAFPAELNGWPDLIAAETRLYKSRRA 145 Query: 144 LIDQDLASLQDMLGLANQELEMNKSLERTGDVGRADVLRLQRNVADIRAQINNKRNKYFQ 203 + A L+D L N+EL + + LE++G +VLRLQR +D+ +I + R++Y+ Sbjct: 146 QLADTEAELRDALASVNKELAITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQYYV 205 Query: 204 EALVDMTKVQEDLN 217 +A ++K +++ Sbjct: 206 QAREALSKANAEVD 219 >PA1877 [M] COG0845 Membrane-fusion protein Pae Pseudomonas aeruginosa Length = 395 Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 157/293 (53%), Gaps = 14/293 (4%) Query: 8 NPLISAQ--------WVLRLSMASVLVLLLWAAVSQIDQVTRAQGQVIAVSRTQSVQAPD 59 +PL++A W L + VL+ + WAA +Q+D+VTR G+V+ SR Q +Q+ + Sbjct: 16 DPLLAATHPVYRPLLWTL---LGCVLLFIGWAAWAQLDEVTRGDGRVVPFSRIQKIQSLE 72 Query: 60 GGPVKQILVKEGEAVKQGQLLMVLEQDRVQTSLNDSRAKVAALRISLARLRAEVYG-HPL 118 GG + ++LVKEG+ V+ GQ L+ L++ R T+ +S + + LR ++ARL AEV G + Sbjct: 73 GGILDRLLVKEGDLVEVGQPLVRLDETRFLTNFQESANQASVLRAAIARLDAEVLGKKSI 132 Query: 119 NFEPDLLDYKEYIANQKDLYVKRKILIDQDLASLQDMLGLANQELEMNKSLERTGDVGRA 178 F PD+ ++++L+ R+ + + ++Q + LA +L++ + L V + Sbjct: 133 EFPPDVDPEGPLARSERELFKSRRDKLVEGTQAIQRQIHLAQSQLDLVRPLVAKRAVSQM 192 Query: 179 DVLRLQRNVADIRAQINNKRNKYFQEALVDMTKVQEDLNTQREQLAESQLQEIRT-IRGE 237 + L+L +++A + ++ ++ YFQ+A + + + DL+ + + Q Q RT I Sbjct: 193 EALKLSQDIATLSGKLTELKSTYFQDAYTERAQRKADLSALEPIVQQRQDQLRRTEILSP 252 Query: 238 MCRQTDAILLAT-SRMRQASEPLAKGLETLQKQLAFYRVVAVRNHLLSLGVPA 289 + + + +L+ T + Q EP+ + + ++ L ++ L G+PA Sbjct: 253 VRGRVNTVLINTRGGVIQPGEPIMEVIPVEERLLVEAKIKPRDVAFLVPGMPA 305 >Z0635 [M] COG0845 Membrane-fusion protein EcZ Escherichia coli O157:H7 EDL933 Length = 391 Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 113/204 (55%) Query: 17 LRLSMASVLVLLLWAAVSQIDQVTRAQGQVIAVSRTQSVQAPDGGPVKQILVKEGEAVKQ 76 +R++ +L L WA Q+D+VT G V R Q VQ+ +GG + + VK G+ V+Q Sbjct: 23 VRVTAVMLLCFLGWAWYFQLDEVTTGSGTVEPSGREQVVQSLEGGILYHLDVKVGDIVEQ 82 Query: 77 GQLLMVLEQDRVQTSLNDSRAKVAALRISLARLRAEVYGHPLNFEPDLLDYKEYIANQKD 136 GQ L L + + ++ + ++ +++ A + ARLRAEV PL F +L + E I ++ Sbjct: 83 GQPLAQLNRTKTESDVQEAMSRLYAALATSARLRAEVSNKPLVFPDELNKFPELIESETA 142 Query: 137 LYVKRKILIDQDLASLQDMLGLANQELEMNKSLERTGDVGRADVLRLQRNVADIRAQINN 196 LY R+ +++ L + L N+EL M + L + G +VLRLQR ++ ++++ Sbjct: 143 LYNTRRDGLNKATTGLTQGISLVNRELAMTQPLVKQGAASSVEVLRLQRQANELENKLSD 202 Query: 197 KRNKYFQEALVDMTKVQEDLNTQR 220 R +Y+ +A ++ K ++ TQR Sbjct: 203 VRTQYYVQAREELAKANAEVETQR 226 >ECs0544 [M] COG0845 Membrane-fusion protein Ecs Escherichia coli O157:H7 Length = 391 Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 113/204 (55%) Query: 17 LRLSMASVLVLLLWAAVSQIDQVTRAQGQVIAVSRTQSVQAPDGGPVKQILVKEGEAVKQ 76 +R++ +L L WA Q+D+VT G V R Q VQ+ +GG + + VK G+ V+Q Sbjct: 23 VRVTAVMLLCFLGWAWYFQLDEVTTGSGTVEPSGREQVVQSLEGGILYHLDVKVGDIVEQ 82 Query: 77 GQLLMVLEQDRVQTSLNDSRAKVAALRISLARLRAEVYGHPLNFEPDLLDYKEYIANQKD 136 GQ L L + + ++ + ++ +++ A + ARLRAEV PL F +L + E I ++ Sbjct: 83 GQPLAQLNRTKTESDVQEAMSRLYAALATSARLRAEVSNKPLVFPDELNKFPELIESETA 142 Query: 137 LYVKRKILIDQDLASLQDMLGLANQELEMNKSLERTGDVGRADVLRLQRNVADIRAQINN 196 LY R+ +++ L + L N+EL M + L + G +VLRLQR ++ ++++ Sbjct: 143 LYNTRRDGLNKATTGLTQGISLVNRELAMTQPLVKQGAASSVEVLRLQRQANELENKLSD 202 Query: 197 KRNKYFQEALVDMTKVQEDLNTQR 220 R +Y+ +A ++ K ++ TQR Sbjct: 203 VRTQYYVQAREELAKANAEVETQR 226 >RSp1183 [M] COG0845 Membrane-fusion protein Rso Ralstonia solanacearum Length = 358 Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 106/190 (55%), Gaps = 1/190 (0%) Query: 29 LWAAVSQIDQVTRAQGQVIAVSRTQSVQAPDGGPVKQILVKEGEAVKQGQLLMVLEQDRV 88 +WAA + +D+V +G+V S+ Q +Q+ +GG + ++ +EG+ V+ GQ L L+ + Sbjct: 1 MWAAFAGLDEVAIGEGKVTPASKGQVIQSLEGGILSELAAREGDVVEAGQKLATLDPVQA 60 Query: 89 QTSLNDSRAKVAALRISLARLRAEVYGHP-LNFEPDLLDYKEYIANQKDLYVKRKILIDQ 147 ++S+ ++ +++AL+ ARLRAE+ P + F P+L K ++ L+ + + Sbjct: 61 RSSMEEALERISALQARAARLRAEMDDLPEVTFPPELAREKAVTDRERQLFAANRRAFRE 120 Query: 148 DLASLQDMLGLANQELEMNKSLERTGDVGRADVLRLQRNVADIRAQINNKRNKYFQEALV 207 ++A+L++ L LA EL++ L RTG ++LRL++ A+ ++ +++Y+ Sbjct: 121 NVANLREQLRLAEDELKIAMPLLRTGATNEVEILRLKQRAAEFATKLAATQSEYYVALKA 180 Query: 208 DMTKVQEDLN 217 D DL Sbjct: 181 DYASTMADLG 190