BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0091.p (433 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3706_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting p... 260 5e-69 RSp1647_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting ... 216 8e-56 mll9515_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting ... 203 7e-52 cheR [NT] COG1352 Methylase of chemotaxis methyl-accepting prote... 111 4e-24 VC1399 [NT] COG1352 Methylase of chemotaxis methyl-accepting pro... 108 3e-23 >PA3706_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Pae Pseudomonas aeruginosa Length = 329 Score = 260 bits (664), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 130/253 (51%), Positives = 176/253 (69%), Gaps = 1/253 (0%) Query: 11 LKAAMGLDMATVGASLIERVVRERMAVLEMEDDALYLSLLLSSAAELQALIELAVVPETW 70 LK+ +GLD ++VG+++IER VR+RM+ L + D+ Y L S E+QALIE VVPETW Sbjct: 9 LKSRIGLDASSVGSAVIERAVRQRMSGLALHDEDEYWMRLNGSPGEVQALIEAVVVPETW 68 Query: 71 FFRDREAILAVARLASDKLAAQPAA-VIRILSLPCSTGEEPYSLAMALLDAGLTPGQFVI 129 FFR E+ +ARLA ++L + +RILSLPCSTGEEPYS+ MALLDAGL+ F + Sbjct: 69 FFRYPESFTTLARLAFERLPSLGGGRALRILSLPCSTGEEPYSIVMALLDAGLSEYLFEV 128 Query: 130 DAYDIRTRSLEIAAAGLYGRNSFRGQELAFRDRHFDLEQGQWRLHERIRSQVRFAPGNLL 189 DA D+ R +E A+ G+YGRNSFRG EL FRDRHF ++L E++R +VRF GNLL Sbjct: 129 DALDVSARVIERASLGVYGRNSFRGDELGFRDRHFSEVAEGYQLAEQVRRKVRFRCGNLL 188 Query: 190 APDFLRHSQPYDFIFCRNVLIYFERDVQRQVVQLLASVMKPDALIFVGPAEGGILLGPTM 249 P L PYDF+FCRN+LIYF+R Q +VV++L +++PD +F+GPAE +L M Sbjct: 189 DPGLLAGEAPYDFVFCRNLLIYFDRPTQSEVVEVLKRLLRPDGAMFIGPAEASLLSQHGM 248 Query: 250 ESAGIALAFGFRK 262 + G+ L+F FR+ Sbjct: 249 QPIGVPLSFVFRR 261 >RSp1647_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Rso Ralstonia solanacearum Length = 255 Score = 216 bits (550), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 118/244 (48%), Positives = 149/244 (61%), Gaps = 13/244 (5%) Query: 11 LKAAMGLDMATVGASLIERVVRERMAVLEMEDD------------ALYLSLLLSSAAELQ 58 L G+D ++GA+ +ER V ER + E Y L + E Q Sbjct: 12 LSLETGIDAPSLGANALERAVLERARAMLAESSPRRPAVADAAALDAYWLRLNTWPEERQ 71 Query: 59 ALIELAVVPETWFFRDREAILAVARLASDKLAAQPAAVIRILSLPCSTGEEPYSLAMALL 118 ALIE VVPETWFFRDREA +ARLA ++L +PA V+RILS+ CSTGEEPYS AMALL Sbjct: 72 ALIEALVVPETWFFRDREAFAELARLAGERLVREPARVLRILSVACSTGEEPYSAAMALL 131 Query: 119 DAGLTPGQFVIDAYDIRTRSLEIAAAGLYGRNSFRGQELAFRDRHFDLEQGQWRLHERIR 178 DAG+ P +F IDA DI R+++ A LYGRN+FRG L FRDR+F W+L+ER+R Sbjct: 132 DAGIGPARFAIDAIDISGRAIDQAEHALYGRNAFRGYPLTFRDRYFSEVADGWQLNERVR 191 Query: 179 SQVRFAPGNLLAPDFLRHSQPYDFIFCRNVLIYFERDVQRQVVQLLASVMKPDALIFVGP 238 +VRF GNL + + YDFIFCRN L YF RD Q ++ L + + +IFVGP Sbjct: 192 RRVRFTQGNLF-DETMDGEARYDFIFCRNALTYFHRDAQDHAIRRLDAQLADGGVIFVGP 250 Query: 239 AEGG 242 AE G Sbjct: 251 AETG 254 >mll9515_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Mlo Mesorhizobium loti Length = 320 Score = 203 bits (516), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 113/278 (40%), Positives = 156/278 (56%), Gaps = 12/278 (4%) Query: 6 AIADKLKAAMGLDMATVGASLIERVVRERMAVLEMEDDALYLSLLLSSAAELQALIELAV 65 AI L +GLD +VG +++ + +++RMA + + Y L S+ ELQ LI V Sbjct: 4 AIETLLTETIGLDSTSVGPTVVRQAIKDRMAACRITNPQAYREHLTGSSQELQELINAVV 63 Query: 66 VPETWFFRDREAILAVARLASDKLAAQPAAVIRILSLPCSTGEEPYSLAMALLDAGLTPG 125 +PETWFFRDREA +AR A AQ I++LSLPCSTGEE YS+AMA+ DAG Sbjct: 64 IPETWFFRDREAFTMLARHARVHKRAQS---IKVLSLPCSTGEEAYSVAMAMFDAGFEAH 120 Query: 126 QFVIDAYDIRTRSLEIAAAGLYGRNSFRGQELAFRDRHFDLEQGQWRLHERIRSQVRFAP 185 +F ID D+ +R++ A +YGRNSFRG L F+DR+F+ +G R + QVRF Sbjct: 121 EFKIDGVDVSSRNIATAERAIYGRNSFRGSHLEFKDRYFEAAEGGLRPIAGVLKQVRFRV 180 Query: 186 GNLLAPDFLRHSQPYDFIFCRNVLIYFERDVQRQVVQLLASVMKPDALIFVGPAEGGILL 245 GNL + YD + CRN+LIYF R++Q + + L ++ D L+ VGPAE + Sbjct: 181 GNLFGSRASFGQEVYDILLCRNLLIYFSRELQDRALICLKDLLAKDGLLLVGPAETALPR 240 Query: 246 GPTMESAGIALAFGFRK---------RVAAAVPPLPPA 274 A LAF F K +V+AA+P P Sbjct: 241 LHGFIPADWPLAFAFLKSEPVKTTAPKVSAAIPVRTPT 278 >cheR [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Eco Escherichia coli K12 Length = 286 Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 14/223 (6%) Query: 26 LIERVVRERMAVLEMEDDALYLSLLLSS--AAELQALIELAVVPETWFFRDREAILAVAR 83 + R+VR R+ L + D YL+LL S+ + E QA I T FFR+ +A Sbjct: 50 VYNRLVR-RLRSLGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHHFPLLAD 108 Query: 84 LASDKLAAQPAAVIRILSLPCSTGEEPYSLAMALLDA-GLTPGQFVIDAYDIRTRSLEIA 142 A + + R+ S STGEEPYS+AM L D G PG++ + A DI T LE A Sbjct: 109 HARRR-----SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKA 163 Query: 143 AAGLYGRNSFRGQELAFRDRHFDL----EQGQWRLHERIRSQVRFAPGNLLAPDFLRHSQ 198 +G+Y + R+F +G R+ + + + V FAP NLLA + Sbjct: 164 RSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLVRVRQELANYVDFAPLNLLAKQYTV-PG 222 Query: 199 PYDFIFCRNVLIYFERDVQRQVVQLLASVMKPDALIFVGPAEG 241 P+D IFCRNV+IYF++ Q+++++ ++KPD L+F G +E Sbjct: 223 PFDAIFCRNVMIYFDQTTQQEILRRFVPLLKPDGLLFAGHSEN 265 >VC1399 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Vch Vibrio cholerae Length = 288 Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 6/239 (2%) Query: 9 DKLKAAMGLDMATVGASLIERVVRERMAVLEMEDDALYLSLLL--SSAAELQALIELAVV 66 D G+ +++ + +R+ + E + Y + L +S ELQA+I V Sbjct: 16 DYFYQKTGIFFENSKRYFVDKRLLQRIELTEHQSFRGYFTYLRFQASGEELQAVINALTV 75 Query: 67 PETWFFRDREAILA-VARLASDKLAAQPAAVIRILSLPCSTGEEPYSLAMALLDA--GLT 123 ET+FFR+ + + V + D + +P +IRI S+PCS+GEEPYS+ + LL+ L Sbjct: 76 NETYFFREISQLESLVEEVLDDIVRHRPGELIRIWSMPCSSGEEPYSIVLFLLEHWPKLE 135 Query: 124 PGQFVIDAYDIRTRSLEIAAAGLYGRNSFRGQELAFRDRHFDLE-QGQWRLHERIRSQVR 182 I A DI T L+ AA G++ S + + +++F L G ++L + IR VR Sbjct: 136 QVDIEIIASDIDTGILQKAAQGIFSARSVKNLPNSSLNKYFSLRADGSYQLIDDIRQSVR 195 Query: 183 FAPGNLLAPDFLRHSQPYDFIFCRNVLIYFERDVQRQVVQLLASVMKPDALIFVGPAEG 241 F NL ++ D IFCRN+LIYF+ +R V+ + P ++F+G +E Sbjct: 196 FTQTNLNNRAEVQKLGAMDVIFCRNLLIYFDDISRRNAVESFYEQLNPGGVLFLGHSES 254