BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0072.p (261 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1627 [R] COG4105 DNA uptake lipoprotein Rso Ralstonia solanac... 336 3e-92 NMA0907 [R] COG4105 DNA uptake lipoprotein NmA Neisseria meningi... 252 5e-67 NMB0703 [R] COG4105 DNA uptake lipoprotein Nme Neisseria meningi... 248 7e-66 PA4545 [R] COG4105 DNA uptake lipoprotein Pae Pseudomonas aerugi... 195 9e-50 yfiO [R] COG4105 DNA uptake lipoprotein Eco Escherichia coli K12 176 4e-44 >RSc1627 [R] COG4105 DNA uptake lipoprotein Rso Ralstonia solanacearum Length = 289 Score = 336 bits (862), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 156/253 (61%), Positives = 199/253 (78%) Query: 9 ALSLTACGLLPEQKDETTGWSAAKLYSEAKDELNAGGYDKAIKYFEKLESRYPFGTYAQQ 68 L+++ACG++PEQ+DET GWSA KLYSEAKD L+ G Y KA+KY+EKLESRYPFG +AQQ Sbjct: 37 CLAISACGIMPEQQDETAGWSANKLYSEAKDALDGGDYSKAVKYYEKLESRYPFGPFAQQ 96 Query: 69 AQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRTSIFDTFTDQ 128 AQ++ AYA Y+ E A LAAVDRFI+LHPNHP+VDY YYL+GLINFND F++Q Sbjct: 97 AQIETAYANYKDGETAAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQ 156 Query: 129 DNTERDPKAMRDAFDSFKLLAERFPDSKYTPDAIARMKYLVNAMSQYDVHVASYYFRRGA 188 D +ERDPKA R A+D+FK L RFP+SKY PDA RM+Y+VNAM++++V A YY+RRGA Sbjct: 157 DLSERDPKAARAAYDAFKTLITRFPNSKYAPDAAQRMQYIVNAMAEHEVQAARYYYRRGA 216 Query: 189 YVSAANRAQSAIKQYPDSPANEEALFILMRSYEALGQTKLKEDTERIIQATYPNSPWYNG 248 Y++A NRAQ AIK Y +PA EE L+I+M+SYEALG L++DTERII+ YPNS + Sbjct: 217 YLAATNRAQEAIKDYDRAPAVEEGLYIMMKSYEALGMKDLRDDTERIIKQNYPNSDFLLY 276 Query: 249 GPKPKSKPWWKLW 261 G + K+KPW++ W Sbjct: 277 GQRKKAKPWYQWW 289 >NMA0907 [R] COG4105 DNA uptake lipoprotein NmA Neisseria meningitidis Z2491 Length = 267 Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 118/262 (45%), Positives = 173/262 (66%), Gaps = 3/262 (1%) Query: 3 FFIIGFALSLTAC---GLLPEQKDETTGWSAAKLYSEAKDELNAGGYDKAIKYFEKLESR 59 + L+L+AC G + + T WS KLY+EA+DELN+ Y +A+K +E LESR Sbjct: 5 LLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESR 64 Query: 60 YPFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRT 119 +P +A+Q+Q+D AYAYY+ +E+ + LAA++RF +LHP HPN+DY YLRGL+ FN+ Sbjct: 65 FPTSRHARQSQLDTAYAYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQ 124 Query: 120 SIFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPDSKYTPDAIARMKYLVNAMSQYDVHV 179 S + QD ++RDPKA R+A+ +F L +RFP+SKY DA ARM LV+A+ ++ V Sbjct: 125 SFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNSKYAADATARMVKLVDALGGNEMSV 184 Query: 180 ASYYFRRGAYVSAANRAQSAIKQYPDSPANEEALFILMRSYEALGQTKLKEDTERIIQAT 239 A YY +RGAY++AANRAQ I Y ++ EE+L IL +Y+ LG+ +L DT R+++ Sbjct: 185 ARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRVLETN 244 Query: 240 YPNSPWYNGGPKPKSKPWWKLW 261 +P SP+ +P PWW+ W Sbjct: 245 FPKSPFLTHAWQPDDMPWWRYW 266 >NMB0703 [R] COG4105 DNA uptake lipoprotein Nme Neisseria meningitidis MC58 Length = 267 Score = 248 bits (634), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 118/262 (45%), Positives = 171/262 (65%), Gaps = 3/262 (1%) Query: 3 FFIIGFALSLTAC---GLLPEQKDETTGWSAAKLYSEAKDELNAGGYDKAIKYFEKLESR 59 + L+L+AC G + + T WS KLY+EA+DELN+ Y +A+K +E LESR Sbjct: 5 LLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESR 64 Query: 60 YPFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRT 119 +P +AQQ+Q+D AYAYY+ +E+ + LAA+DRF +LHP HPN+DY YLRGL+ FN+ Sbjct: 65 FPTSRHAQQSQLDTAYAYYKDDEKDKALAAIDRFRRLHPQHPNMDYALYLRGLVLFNEDQ 124 Query: 120 SIFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPDSKYTPDAIARMKYLVNAMSQYDVHV 179 S + QD ++RDPKA R+A+ +F L +RFP+SKY DA ARM LV+A+ ++ V Sbjct: 125 SFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNSKYAADATARMVKLVDALGGNEMSV 184 Query: 180 ASYYFRRGAYVSAANRAQSAIKQYPDSPANEEALFILMRSYEALGQTKLKEDTERIIQAT 239 A YY +RGAY++AANRAQ I Y ++ EE+L IL +Y+ L + +L DT R+++ Sbjct: 185 ARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYKKLDKPRLAADTRRVLETN 244 Query: 240 YPNSPWYNGGPKPKSKPWWKLW 261 +P SP+ + PWW+ W Sbjct: 245 FPKSPFLKQPWRSDDMPWWRYW 266 >PA4545 [R] COG4105 DNA uptake lipoprotein Pae Pseudomonas aeruginosa Length = 341 Score = 195 bits (495), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 145/235 (61%), Gaps = 2/235 (0%) Query: 15 CGLLPEQKDETTGWSAAKLYSEAKDELNAGGYDKAIKYFEKLESRYPFGTYAQQAQMDIA 74 C E DE S ++LY +A+D+LN Y+ A+ + LESRYPFG YA+QAQ+++ Sbjct: 18 CSSNKETVDEN--LSESQLYQQAQDDLNNKSYNSAVTKLKALESRYPFGRYAEQAQLELI 75 Query: 75 YAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRTSIFDTFTDQDNTERD 134 YA Y+ E AA +RFI+LHP HPNVDY YYL+GL +F+ + F D T+RD Sbjct: 76 YANYKNMEPEAARAAAERFIRLHPQHPNVDYAYYLKGLSSFDQDRGLLARFLPLDMTKRD 135 Query: 135 PKAMRDAFDSFKLLAERFPDSKYTPDAIARMKYLVNAMSQYDVHVASYYFRRGAYVSAAN 194 P A RD+F+ F L RFP+S+Y PDA ARM YL N ++ Y+VHV YY +R AYV+AAN Sbjct: 136 PGAARDSFNEFAQLTSRFPNSRYAPDAKARMVYLRNLLAAYEVHVGHYYLKRQAYVAAAN 195 Query: 195 RAQSAIKQYPDSPANEEALFILMRSYEALGQTKLKEDTERIIQATYPNSPWYNGG 249 R + ++ + ++PA + L I++ +Y LG L + ++ YP++ G Sbjct: 196 RGRYVVENFQETPAVGDGLAIMVEAYRRLGLDDLASTSLETLKLNYPDNASLKDG 250 >yfiO [R] COG4105 DNA uptake lipoprotein Eco Escherichia coli K12 Length = 245 Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 89/243 (36%), Positives = 139/243 (57%), Gaps = 1/243 (0%) Query: 1 LKFFIIGFALSLTACGLLPEQKDETTGWSAAKLYSEAKDELNAGGYDKAIKYFEKLESRY 60 +K+ + LSL G K+E ++Y+ A+ +L G + +AI E L++RY Sbjct: 4 MKYLVAAATLSLFLAGC-SGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRY 62 Query: 61 PFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRTS 120 PFG Y+QQ Q+D+ YAYY+ + AA+DRFI+L+P HPN+DY+ Y+RGL N S Sbjct: 63 PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 122 Query: 121 IFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPDSKYTPDAIARMKYLVNAMSQYDVHVA 180 F D ++RDP+ R AF F L +P+S+YT DA R+ +L + +++Y+ VA Sbjct: 123 ALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA 182 Query: 181 SYYFRRGAYVSAANRAQSAIKQYPDSPANEEALFILMRSYEALGQTKLKEDTERIIQATY 240 YY RGA+V+ NR + ++ YPD+ A +AL ++ +Y + E +II A Sbjct: 183 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 242 Query: 241 PNS 243 N+ Sbjct: 243 SNT 245