BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0053.p         (105 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0179 [T] COG0784 FOG Pae Pseudomonas aeruginosa                     145   2e-35
RSp1409 [T] COG0784 FOG Rso Ralstonia solanacearum                    111   5e-25
VCA1096 [T] COG0784 FOG Vch Vibrio cholerae                           107   9e-24
SMc03006 [T] COG0784 FOG Sme Sinorhizobium meliloti                   100   8e-22
CC0432 [T] COG0784 FOG Ccr Caulobacter vibrioides                     100   1e-21

>PA0179 [T] COG0784 FOG Pae Pseudomonas aeruginosa
          Length = 121

 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 82/104 (78%)

Query: 1   MVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTLIRSLRELTSYAR 60
           M+ F+LK+AGY V EA DG + L KA+S+++ LV TDQNMP MDGL+LIRSLR L  Y  
Sbjct: 17  MLSFTLKSAGYEVDEAADGKEGLGKAQSKSYSLVFTDQNMPNMDGLSLIRSLRNLAGYRS 76

Query: 61  VPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 104
           VPILMLTTE SD MK +G++AGA GWLVKPFDP +L EV RKV+
Sbjct: 77  VPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLLEVTRKVL 120


>RSp1409 [T] COG0784 FOG Rso Ralstonia solanacearum
          Length = 137

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 73/107 (68%), Gaps = 3/107 (2%)

Query: 1   MVVFSLKAAGYNVTEAVDGVDALEKAKSQ---TFDLVLTDQNMPRMDGLTLIRSLRELTS 57
           M+   L+A G+ VTEA DG  ALE  + Q   +  LV+TDQ MP MDGLTLIR+LR L +
Sbjct: 18  MIATCLRACGFAVTEATDGAAALEAVQRQADGSHHLVITDQVMPAMDGLTLIRALRTLPA 77

Query: 58  YARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 104
           YA  PILMLTTE    ++ + +AAGA G+L KPFDP  LT+ V +++
Sbjct: 78  YADTPILMLTTEADSTIRDQARAAGATGFLPKPFDPDGLTDSVMQLL 124


>VCA1096 [T] COG0784 FOG Vch Vibrio cholerae
          Length = 125

 Score =  107 bits (266), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 71/104 (68%)

Query: 1   MVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTLIRSLRELTSYAR 60
           MV  +L+ AGY V  A DG +AL KA+   FD++++D NMP M G   ++++R  + Y  
Sbjct: 22  MVSHTLQDAGYEVETAADGREALAKAQKARFDVIISDVNMPVMTGFEFVKAVRMQSQYKF 81

Query: 61  VPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 104
            PILMLTTE S E K +GKA GA GWLVKPF+P+ L + +++V+
Sbjct: 82  TPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125


>SMc03006 [T] COG0784 FOG Sme Sinorhizobium meliloti
          Length = 121

 Score =  100 bits (249), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 67/103 (65%)

Query: 1   MVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTLIRSLRELTSYAR 60
           M++ +L  AG+   +A DGV+ LEK  +   D+++TD NMPR+DG   I  +R+   Y  
Sbjct: 17  MLLVTLNNAGFETIQAEDGVEGLEKLDTANPDVIVTDINMPRLDGFGFIEGVRKNDRYRA 76

Query: 61  VPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKV 103
           VPIL+LTTE   E K + + AGA GW+VKPFDP +L + + +V
Sbjct: 77  VPILVLTTESDAEKKNRARQAGATGWIVKPFDPTKLIDAIERV 119


>CC0432 [T] COG0784 FOG Ccr Caulobacter vibrioides
          Length = 121

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%)

Query: 1   MVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTLIRSLRELTSYAR 60
           M+  +L  AG+NV EAVDG   LE   +   D+++TD NMP++DG   I ++R    Y  
Sbjct: 17  MLRMALAGAGFNVVEAVDGEHGLEVLSAHRPDVIITDINMPKLDGFGFIEAVRVDDDYRA 76

Query: 61  VPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKV 103
           +PIL+LTTE     K + + AGA GW+VKPF+P++L + +R+V
Sbjct: 77  IPILVLTTESDPAKKQRAREAGATGWIVKPFNPEKLVDAIRRV 119