BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0011.p (374 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1221 [R] COG2262 GTPases Rso Ralstonia solanacearum 448 e-126 PA4943 [R] COG2262 GTPases Pae Pseudomonas aeruginosa 404 e-112 VC0348 [R] COG2262 GTPases Vch Vibrio cholerae 397 e-110 STM4362 [R] COG2262 GTPases Sty Salmonella typhimurium LT2 384 e-106 hflX [R] COG2262 GTPases Eco Escherichia coli K12 384 e-106 >RSc1221 [R] COG2262 GTPases Rso Ralstonia solanacearum Length = 417 Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust. Identities = 240/352 (68%), Positives = 283/352 (80%), Gaps = 5/352 (1%) Query: 2 RAALVGLDFGKNDFAASLDELYLLAKSAGAEPVITITGRRASPDAALFIGTGKAQEVADA 61 RA LV +DFGK+DF SL EL LLA +AG+EPV +TGRR+ PDAALFIG GKA+EV A Sbjct: 13 RAILVAVDFGKHDFQESLSELALLASTAGSEPVRAVTGRRSRPDAALFIGAGKAEEVKIA 72 Query: 62 VADLQLELVIFNHALSPAQQRNLERLLKVRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 + E+VIFNHALSPAQQRNLER V+DRT LILDIF+QRA+SH GKVQVELA++ Sbjct: 73 ADEDDAEIVIFNHALSPAQQRNLERFFGRHVVDRTGLILDIFSQRAQSHVGKVQVELARV 132 Query: 122 QHLSTRLIRGWTHLERQKGGIGLRGPG-ETQLETDRRLLGERVKALRAVLAKLRRQHATQ 180 ++ ++RL+R W+HLERQKGGIG+RG E QLE DRR+L ER K L A L +L+RQH TQ Sbjct: 133 RYQASRLVRAWSHLERQKGGIGMRGGPGERQLELDRRMLDERAKRLSAELDRLQRQHDTQ 192 Query: 181 RRARGRNETFSVSLVGYTNAGKSTIFNALAKAGVYAANQLFATLDTTSRRVYLGEVGHVV 240 RRAR RN+ FSVSLVGYTNAGKST+FNAL KA YAANQLFATLDTTSRR+YL +G+VV Sbjct: 193 RRARSRNDAFSVSLVGYTNAGKSTLFNALTKARAYAANQLFATLDTTSRRLYLEGLGNVV 252 Query: 241 ISDTVGFIRELPHQLVEAFRATLEETIHADLLLHVVDAASPVRMEQIEEVNLVLKEIGAD 300 +SDTVGFIR+LP QLV AFRATLEET+HAD+LLHVVDAAS V+ EQ+E+V+ VL EI A Sbjct: 253 LSDTVGFIRDLPTQLVAAFRATLEETVHADVLLHVVDAASAVKHEQMEQVDRVLAEINAS 312 Query: 301 HVPQILVWNKIDAA----GLEPTVEYDEYGKIQRVFVSAKSGAGLDLLREAI 348 +PQILV NKIDAA P +E DE G ++RVFVSA GAGL+LLREA+ Sbjct: 313 DIPQILVMNKIDAAEELRSQGPRIERDEAGAVRRVFVSALEGAGLELLREAL 364 >PA4943 [R] COG2262 GTPases Pae Pseudomonas aeruginosa Length = 433 Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust. Identities = 209/352 (59%), Positives = 264/352 (75%), Gaps = 1/352 (0%) Query: 2 RAALVGLDFGKNDFAASLDELYLLAKSAGAEPVITITGRRASPDAALFIGTGKAQEVADA 61 +A LV L+ + E L +SAGAE V ++ R P A IG+GK +E+ D Sbjct: 11 QAVLVHLEGQNPEAREDPQEFQELVRSAGAETVAFVSVSRHQPSAKYLIGSGKVEELHDL 70 Query: 62 VADLQLELVIFNHALSPAQQRNLERLLKVRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 V +ELVIFNH L+P+Q+RNLER + RVLDRT LILDIFAQRA++HEGK+QVELAQL Sbjct: 71 VKAENVELVIFNHTLTPSQERNLERAFECRVLDRTGLILDIFAQRARTHEGKLQVELAQL 130 Query: 122 QHLSTRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLGERVKALRAVLAKLRRQHATQR 181 +H+STRL+RGWTHLERQKGGIGLRGPGETQLETDRRLL R++ ++ L K+R Q R Sbjct: 131 EHMSTRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRVRIRQIKQRLEKVRSQREQAR 190 Query: 182 RARGRNETFSVSLVGYTNAGKSTIFNALAKAGVYAANQLFATLDTTSRRVYLGEVGHVVI 241 R R R + +VSLVGYTNAGKST+FN+L + VYAANQLFATLD T RR+ L ++G VV+ Sbjct: 191 RGRKRADIPAVSLVGYTNAGKSTLFNSLTASEVYAANQLFATLDPTLRRLQLDDLGPVVL 250 Query: 242 SDTVGFIRELPHQLVEAFRATLEETIHADLLLHVVDAASPVRMEQIEEVNLVLKEIGADH 301 +DTVGFIR LPH+LVEAFRATLEE+ +ADLLLHV+DA P R Q+E+V VL EIGA+ Sbjct: 251 ADTVGFIRHLPHKLVEAFRATLEESSNADLLLHVIDAYEPERDAQVEQVLAVLGEIGANE 310 Query: 302 VPQILVWNKID-AAGLEPTVEYDEYGKIQRVFVSAKSGAGLDLLREAIAASL 352 +P + V+NK+D +EP ++ D+ GK RV++SA++G GLDLLR+AIA L Sbjct: 311 LPMLEVYNKVDLLPSVEPHIQRDDSGKPVRVWLSAQTGEGLDLLRQAIAELL 362 >VC0348 [R] COG2262 GTPases Vch Vibrio cholerae Length = 429 Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust. Identities = 211/354 (59%), Positives = 260/354 (73%), Gaps = 5/354 (1%) Query: 2 RAALVGLDFGKNDFAASLDELYLLAKSAGAEPVITITGRRASPDAALFIGTGKAQEVADA 61 RA LV ++F + L E +L SAG + +TG R +P F+G GKAQE+A+A Sbjct: 10 RAVLVHVNFTQRGEWEDLSECKMLISSAGVTTLHVVTGSRQTPHPKYFVGEGKAQEIAEA 69 Query: 62 VADLQLELVIFNHALSPAQQRNLERLLKVRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 V +VIFNHALSPAQ+RNLERL + RV+DRT LILDIFAQRA++HEGK+QVELAQL Sbjct: 70 VQMHVANVVIFNHALSPAQERNLERLCQCRVIDRTGLILDIFAQRARTHEGKLQVELAQL 129 Query: 122 QHLSTRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLGERVKALRAVLAKLRRQHATQR 181 +H+STRLIRGWTHLERQKGGIGLRGPGETQLETDRRLL ER+KA+ L K+ +Q R Sbjct: 130 RHISTRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLRERIKAILRRLEKVAKQREQGR 189 Query: 182 RARGRNETFSVSLVGYTNAGKSTIFNALAKAGVYAANQLFATLDTTSRRVYLGEVGHVVI 241 RAR R E ++SLVGYTNAGKST+FN + +AGVYAA+QLFATLD T R++ L +VG V+ Sbjct: 190 RARSRAEIPTISLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIDLVDVGPAVL 249 Query: 242 SDTVGFIRELPHQLVEAFRATLEETIHADLLLHVVDAASPVRMEQIEEVNLVLKEIGADH 301 +DTVGFIR LPH LV AF+ATL+ET AD+LLHVVDA+ E I+ V VL+EI A Sbjct: 250 ADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVETVLQEIDAHE 309 Query: 302 VPQILVWNKIDAAGLE---PTVEYDEYGKIQRVFVSAKSGAGLDLLREAIAASL 352 VP +LV NKID LE P +E D+ G + V++SA GAG +LL EA++ L Sbjct: 310 VPTLLVMNKID--NLEEQSPRIERDDEGVPRVVWISAMQGAGTELLFEALSERL 361 >STM4362 [R] COG2262 GTPases Sty Salmonella typhimurium LT2 Length = 426 Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust. Identities = 200/352 (56%), Positives = 255/352 (72%), Gaps = 1/352 (0%) Query: 2 RAALVGLDFGKNDFAASLDELYLLAKSAGAEPVITITGRRASPDAALFIGTGKAQEVADA 61 +A LV + F ++ L E L SAG E + ITG R +P F+G GKA E+A+A Sbjct: 10 QAVLVHIYFSQDKDMEDLQEFESLVSSAGVEAMQVITGSRKAPHPKYFVGEGKAVEIAEA 69 Query: 62 VADLQLELVIFNHALSPAQQRNLERLLKVRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 V +V+F+HALSPAQ+RNLERL + RV+DRT LILDIFAQRA++HEGK+QVELAQL Sbjct: 70 VKATGAAVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQL 129 Query: 122 QHLSTRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLGERVKALRAVLAKLRRQHATQR 181 +HL+TRL+RGWTHLERQKGGIGLRGPGETQLETDRRLL R+ +++ L K+ +Q R Sbjct: 130 RHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQIQSRLEKVEKQREQGR 189 Query: 182 RARGRNETFSVSLVGYTNAGKSTIFNALAKAGVYAANQLFATLDTTSRRVYLGEVGHVVI 241 ++R + + +VSLVGYTNAGKST+FN + +A VYAA+QLFATLD T RR+ + +VG V+ Sbjct: 190 QSRIKADVPTVSLVGYTNAGKSTLFNQITEARVYAADQLFATLDPTLRRIDVADVGETVL 249 Query: 242 SDTVGFIRELPHQLVEAFRATLEETIHADLLLHVVDAASPVRMEQIEEVNLVLKEIGADH 301 +DTVGFIR LPH LV AF+ATL+ET A LLLHVVDAA E IE VN VL+EI A Sbjct: 250 ADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE 309 Query: 302 VPQILVWNKIDA-AGLEPTVEYDEYGKIQRVFVSAKSGAGLDLLREAIAASL 352 +P ++V NKID EP ++ DE K RV++SA+SG G+ L +A+ L Sbjct: 310 IPTLMVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQSGVGIPQLFQALTERL 361 >hflX [R] COG2262 GTPases Eco Escherichia coli K12 Length = 426 Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust. Identities = 199/352 (56%), Positives = 256/352 (72%), Gaps = 1/352 (0%) Query: 2 RAALVGLDFGKNDFAASLDELYLLAKSAGAEPVITITGRRASPDAALFIGTGKAQEVADA 61 +A LV + F ++ L E L SAG E + ITG R +P F+G GKA E+A+A Sbjct: 10 QAVLVHIYFTQDKDMEDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEA 69 Query: 62 VADLQLELVIFNHALSPAQQRNLERLLKVRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 V +V+F+HALSPAQ+RNLERL + RV+DRT LILDIFAQRA++HEGK+QVELAQL Sbjct: 70 VKATGASVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQL 129 Query: 122 QHLSTRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLGERVKALRAVLAKLRRQHATQR 181 +HL+TRL+RGWTHLERQKGGIGLRGPGETQLETDRRLL R+ +++ L ++ +Q R Sbjct: 130 RHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQIQSRLERVEKQREQGR 189 Query: 182 RARGRNETFSVSLVGYTNAGKSTIFNALAKAGVYAANQLFATLDTTSRRVYLGEVGHVVI 241 ++R + + +VSLVGYTNAGKST+FN + +A VYAA+QLFATLD T RR+ + +VG V+ Sbjct: 190 QSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVL 249 Query: 242 SDTVGFIRELPHQLVEAFRATLEETIHADLLLHVVDAASPVRMEQIEEVNLVLKEIGADH 301 +DTVGFIR LPH LV AF+ATL+ET A LLLHV+DAA E IE VN VL+EI A Sbjct: 250 ADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHE 309 Query: 302 VPQILVWNKIDA-AGLEPTVEYDEYGKIQRVFVSAKSGAGLDLLREAIAASL 352 +P +LV NKID EP ++ DE K RV++SA++GAG+ L +A+ L Sbjct: 310 IPTLLVMNKIDMLEDFEPRIDRDEENKPNRVWLSAQTGAGIPQLFQALTERL 361