BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0004.p (217 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1859 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 276 2e-74 RSc1152 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 256 2e-68 YPO0669 [K] COG0583 Transcriptional regulator Ype Yersinia pestis 236 3e-62 STM0256 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 199 4e-51 NMA0601 [K] COG0583 Transcriptional regulator NmA Neisseria meni... 196 4e-50 >PA1859 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 295 Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 127/217 (58%), Positives = 167/217 (76%) Query: 1 MESAQDSIRLRTRKPVGKLRVDASAPFMLHCVVPHVGQFRAAYPDIELELTTNDRFIDLV 60 ME+ ++ + LR + P G+LR++A++PFMLH VVPH+G+FR YPDI+LEL TND IDL+ Sbjct: 77 MEALEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYPDIQLELNTNDLIIDLL 136 Query: 61 EHRADIAIRIGELQDSSLHARALSSARLNVVASPAYLARHGEPESVEALEQHQLIGFSQP 120 E R D+AIRIG L DS+LHAR L ++RL+++ASP YLARHG P S+E L H L+GF+QP Sbjct: 137 EQRTDVAIRIGALSDSTLHARPLGASRLHILASPEYLARHGTPASIEGLRGHTLLGFTQP 196 Query: 121 DQLNHWPLRHSAGDRYQTRPAIRASSGETIRHLALQGQGIACLSNFMSDADIAAGRLVRL 180 + LN WP+ H+ GDR + +P I ASSGET+R LAL QGIACL++FM+D DI GRLV L Sbjct: 197 EHLNRWPVVHADGDRLEIQPDISASSGETLRQLALSHQGIACLASFMTDRDIQDGRLVPL 256 Query: 181 LPQADSGYRQKISAVYYYSTQLSRRISCFLDFLQEKL 217 + S YRQ I AVYY ++QL+ RI CFLDF+Q++L Sbjct: 257 FAEQMSEYRQPIHAVYYRNSQLALRIQCFLDFIQQRL 293 >RSc1152 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 297 Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 122/217 (56%), Positives = 159/217 (73%) Query: 1 MESAQDSIRLRTRKPVGKLRVDASAPFMLHCVVPHVGQFRAAYPDIELELTTNDRFIDLV 60 ++ A++ I LR ++P G+LRV+A+ PFMLH + P V FRA YP IELEL T+DR IDL+ Sbjct: 77 VDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYPQIELELNTSDRIIDLL 136 Query: 61 EHRADIAIRIGELQDSSLHARALSSARLNVVASPAYLARHGEPESVEALEQHQLIGFSQP 120 E D+AIRIG L+DS+L AR L + RL V+ASPAYL HG P +V+AL H L+GF QP Sbjct: 137 EEDTDVAIRIGALRDSTLRARRLGTRRLRVLASPAYLKAHGRPRTVDALRHHALLGFVQP 196 Query: 121 DQLNHWPLRHSAGDRYQTRPAIRASSGETIRHLALQGQGIACLSNFMSDADIAAGRLVRL 180 + LNHWPLR GDR + P ++ASSGET+R LALQG GI CL++FM+ D AG LV++ Sbjct: 197 ESLNHWPLRGPHGDRLRITPTLKASSGETLRQLALQGAGIVCLADFMTARDRRAGDLVQV 256 Query: 181 LPQADSGYRQKISAVYYYSTQLSRRISCFLDFLQEKL 217 LP+A +Q I AVYY +TQL+ RI+CFLD L+ +L Sbjct: 257 LPEATVEIQQPIHAVYYRNTQLASRITCFLDVLEARL 293 >YPO0669 [K] COG0583 Transcriptional regulator Ype Yersinia pestis Length = 303 Score = 236 bits (602), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 117/217 (53%), Positives = 154/217 (70%) Query: 1 MESAQDSIRLRTRKPVGKLRVDASAPFMLHCVVPHVGQFRAAYPDIELELTTNDRFIDLV 60 ++ A++ I LR KP G+LRV+A+APFM H +VP + FRA YP I LEL T+D IDL+ Sbjct: 77 VDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYPQITLELNTDDLNIDLL 136 Query: 61 EHRADIAIRIGELQDSSLHARALSSARLNVVASPAYLARHGEPESVEALEQHQLIGFSQP 120 E R DIAIRIG L+DS++HAR L ++R+ ++ASP YL RHG P +EAL H L+GF+QP Sbjct: 137 EQRTDIAIRIGALRDSTIHARLLGASRVRLLASPNYLQRHGTPHIIEALADHSLLGFTQP 196 Query: 121 DQLNHWPLRHSAGDRYQTRPAIRASSGETIRHLALQGQGIACLSNFMSDADIAAGRLVRL 180 + LN W L H G R P + ASSGET+R LALQG+GIA LS+FM+ D AGRLV + Sbjct: 197 EFLNQWSLPHLPGGRSSIIPNLAASSGETLRLLALQGEGIAELSDFMTREDQLAGRLVEV 256 Query: 181 LPQADSGYRQKISAVYYYSTQLSRRISCFLDFLQEKL 217 L Q I+AVYY +TQL+ RI+CFLD++ E++ Sbjct: 257 LADQILETWQPINAVYYRNTQLAARITCFLDYVSEQI 293 >STM0256 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 304 Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 97/215 (45%), Positives = 136/215 (63%) Query: 1 MESAQDSIRLRTRKPVGKLRVDASAPFMLHCVVPHVGQFRAAYPDIELELTTNDRFIDLV 60 M +A+ I P G LR+DA+ P MLH ++P + FR YP+I L L +++ FI+L+ Sbjct: 77 MAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYPEITLSLVSSETFINLI 136 Query: 61 EHRADIAIRIGELQDSSLHARALSSARLNVVASPAYLARHGEPESVEALEQHQLIGFSQP 120 E + D+AIR G L DSSL AR L ++ ++ASP Y+AR G+PE+VE L++H +GFS+P Sbjct: 137 ERKVDVAIRAGTLTDSSLRARPLFTSYRKIIASPDYIARFGKPETVEELKRHLCLGFSEP 196 Query: 121 DQLNHWPLRHSAGDRYQTRPAIRASSGETIRHLALQGQGIACLSNFMSDADIAAGRLVRL 180 LN WP+ S G ++ + I ++SGET++ L L G GIACLS++M D +IA G LV L Sbjct: 197 VSLNTWPIACSDGQLHEIKCGISSNSGETLKQLCLNGNGIACLSDYMIDKEIARGELVEL 256 Query: 181 LPQADSGYRQKISAVYYYSTQLSRRISCFLDFLQE 215 L SAVYY +S RI F+DFL E Sbjct: 257 LADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSE 291 >NMA0601 [K] COG0583 Transcriptional regulator NmA Neisseria meningitidis Z2491 Length = 299 Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 94/203 (46%), Positives = 129/203 (63%) Query: 15 PVGKLRVDASAPFMLHCVVPHVGQFRAAYPDIELELTTNDRFIDLVEHRADIAIRIGELQ 74 P G LRVD++ P +LH + P +F YP I L L +++ +I+L+E + DIA+R GEL Sbjct: 91 PQGVLRVDSAMPMVLHLLAPLAAKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGELD 150 Query: 75 DSSLHARALSSARLNVVASPAYLARHGEPESVEALEQHQLIGFSQPDQLNHWPLRHSAGD 134 DS L AR L +R V+ASP YLA+HG P+S E L HQ +GF++P LN W + + G+ Sbjct: 151 DSGLRARHLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGN 210 Query: 135 RYQTRPAIRASSGETIRHLALQGQGIACLSNFMSDADIAAGRLVRLLPQADSGYRQKISA 194 Y+ P ASSGE +R L L G GIACLS+F+ D DIA G+L+ LL + S +A Sbjct: 211 PYKISPHFTASSGEILRSLCLSGCGIACLSDFLVDNDIAEGKLIPLLAEQTSNKTHPFNA 270 Query: 195 VYYYSTQLSRRISCFLDFLQEKL 217 VYY ++ R+ FLDFL E+L Sbjct: 271 VYYSDKAVNLRLRVFLDFLVEEL 293