BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0195.p (288 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll7200 Non COG 121 2e-27 APE2523 [E] COG4177 ABC-type branched-chain amino acid transport... 84 4e-16 BMEII0874_2 [E] COG4177 ABC-type branched-chain amino acid trans... 79 1e-14 SMc03117 [E] COG4177 ABC-type branched-chain amino acid transpor... 74 5e-13 AGc2606_1 [E] COG4177 ABC-type branched-chain amino acid transpo... 73 7e-13 >mll7200 Non COG Length = 355 Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 109/177 (61%), Gaps = 3/177 (1%) Query: 49 CYFIFASMWNLLAGYGGMVSIGQQAYLGLGGYLMLILSNLYGVNPFVAIPIAALLTALAA 108 Y I A+MWN LAG+GG+VS+GQQ + GLG Y + L++ G+NPF ++ ++A++ L + Sbjct: 51 IYVILAAMWNALAGFGGLVSVGQQVFFGLGAYFAIRLAD-AGLNPFASLFVSAIIVGLVS 109 Query: 109 IPVSRLAFRLKGGYFAIGTWVIADVFRLSFANLG-VVGGGSGASLTALADIERSTRESVT 167 P+S RL+ G FAIG WVIA + L NL +V G +G SL +L + TR Sbjct: 110 WPLSLFMLRLRNGEFAIGMWVIAALTHL-LVNLDRLVQGETGTSLISLNVYDAGTRRVAI 168 Query: 168 FWMTLSAVVATIALTYFFLRSKQGLALMAIRDSEIASESQGIDVRRVKLGVYVVSAL 224 +W+ L ++ A +A+ + LR G A+ AIRD+E A+ S G+ V K ++V++A Sbjct: 169 YWLALGSMTALLAILFGLLRGSTGAAIRAIRDNEDAAASVGVRVTGTKRLLFVLAAF 225 >APE2523 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ape Aeropyrum pernix Length = 332 Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 9/211 (4%) Query: 21 AGLLLAAVGCTLPWWGQSSWMREFNQIACYFIFASMWNLLAGYGGMVSIGQQAYLGLGGY 80 A ++LA L G+ ++ Y I A WNLL GY G+ S+G + G+GGY Sbjct: 22 AAMILAVAPVLLDLAGKPFYVNMIFLSLMYGISAMAWNLLMGYTGLFSLGHAVFFGVGGY 81 Query: 81 LMLILSNLYGVNPFVAIPIAALLTALAAIPVSRLAFRLKGGYFAIGTWVIADVFRLSFAN 140 +++L+ Y V P++ +P+A L A+ A +S RL+ +F + T + ++FRLSFA+ Sbjct: 82 TVIVLALRYNVTPWIGLPVAGLTAAMLAAALSPPLLRLRSHWFTLATIALGEIFRLSFAH 141 Query: 141 LGVVGGGSGASLTALADIERSTR------ESVTFWMTLSAVVATIALTYFFLRSKQGLAL 194 VG +G + ERS +V ++ ++ + + + + SK G + Sbjct: 142 WDYVGASAGLQMPI---SERSIYYVQFAGATVYSYIAMAILAVELLFLWKIINSKTGFYM 198 Query: 195 MAIRDSEIASESQGIDVRRVKLGVYVVSALY 225 IR+ E+ +++ GI+ K V+SA + Sbjct: 199 QTIREDELVAQTLGINTFNYKALSLVISAFF 229 >BMEII0874_2 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Bme Brucella melitensis Length = 315 Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 101/189 (53%), Gaps = 13/189 (6%) Query: 44 FNQIACYFIFASMWNLLAGYGGMVSIGQQAYLGLGGYLMLILSNLYGVNPFVAIPIAALL 103 F I + ++ WN++ G+ G +S+G + G+GGY +IL N+ G++P+ ++ I A + Sbjct: 24 FITICLFAALSTAWNIVGGFAGQMSLGHAVFYGIGGYTGVILFNM-GISPWFSMFIGAFI 82 Query: 104 TALAAIPVSRLAFRLKGGYFAIGTWVIADVFRLSFANLGVVGGGSGASLTAL-------A 156 AL + +S FRLKG ++++ + +VFR+ + G + GG+ + L Sbjct: 83 AALVGMVISYPCFRLKGPFYSLASIAFLEVFRVLALHFGWLTGGATGLMIQLKLGWVWMV 142 Query: 157 DIERSTRESVTFWMTLSAVVATIALTYFFLRSKQGLALMAIRDSEIASESQGIDVRRVKL 216 ER + F M L T+A+T+ RS+ G L+A R+ E A+ + G+ RV+L Sbjct: 143 FRERWPSLLIVFGMLL----VTLAITWAVRRSRLGFYLVATRERESAARAAGVRTVRVRL 198 Query: 217 -GVYVVSAL 224 V + SAL Sbjct: 199 IAVAISSAL 207 >SMc03117 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 330 Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 9/184 (4%) Query: 46 QIACYFIFASMWNLLAGYGGMVSIGQQAYLGLGGYLMLILSNLYGVNPFVAIPIAALLTA 105 +I C+ +FA +NLL GY G++S G A+ G Y +GV P + I + + A Sbjct: 44 KILCFALFACAFNLLLGYTGLLSFGHAAFFGGAAYFTAHAVKEWGVPPELGILLGVVGAA 103 Query: 106 LAAIPVSRLAFRLKGGYFAIGTWVIADVFRLSFANLGVVGGGSG------ASLTALADIE 159 L V A R +G YFA+ T +A +F G G G L D+ Sbjct: 104 LLGAVVGFFAIRRQGIYFAMITLALAQMFYFFCLQAGFTRGEDGIQSVPRGHLLGFIDLS 163 Query: 160 RSTRESVTFWMTLSAVVATIALTYFFLRSKQGLALMAIRDSEIASESQGIDVRRVKLGVY 219 + T ++ L+ V IA+ + + S G+ L +IR++E + S G VR KL + Sbjct: 164 QPTN---MYYFVLAVFVIGIAMIWRIINSPFGMILKSIRENETRAISLGYSVRNYKLAAF 220 Query: 220 VVSA 223 V+SA Sbjct: 221 VMSA 224 >AGc2606_1 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 323 Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 6/200 (3%) Query: 20 LAGLLLAAVGCTLPWWGQSSWMREFNQIACYFIFASMWNLLAGYGGMVSIGQQAYLGLGG 79 +A L L A+ LP W+ N I + A LL G GGM S GQ A+ G G Sbjct: 16 VAALFLVAIFPLLPV--PPFWVTLANNIGLASLVAIGLVLLTGVGGMTSFGQAAFCGFGA 73 Query: 80 YLMLILSNLYGVNPFVAIPIAALLTALAAIPVSRLAFRLKGGYFAIGT--WVIADVFRLS 137 Y +L++ YG +P++ +P++ L+ A+ A+P+ + RL G Y +GT W +A + Sbjct: 74 YTTAVLTSAYGFSPWLTLPLSLLVGAVVALPLGLMTVRLSGHYLPLGTIAWGLAIYYLFG 133 Query: 138 -FANLGVVGGGSGASLTALADIERSTRESVTFWMTLSAVVATIALTYFFLRSKQGLALMA 196 LG G SG +L E S +++ V+A L S+ G + A Sbjct: 134 RIELLGRYDGISGIPPLSLGG-EALMSSSSIYYIIWIFVIAVAIGAQNLLDSRVGRGIRA 192 Query: 197 IRDSEIASESQGIDVRRVKL 216 +R A+E+ G+++ R KL Sbjct: 193 LRGGSQAAEAFGVNIERAKL 212