BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0164.p (342 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0231 [C] COG4313 Protein involved in meta-pathway of phenol d... 178 2e-44 PA2421 [C] COG4313 Protein involved in meta-pathway of phenol de... 139 1e-32 PA2474 [C] COG4313 Protein involved in meta-pathway of phenol de... 134 2e-31 PA5325 [C] COG4313 Protein involved in meta-pathway of phenol de... 88 4e-17 RSc1833 [C] COG4313 Protein involved in meta-pathway of phenol d... 65 2e-10 >RSp0231 [C] COG4313 Protein involved in meta-pathway of phenol degradation Rso Ralstonia solanacearum Length = 319 Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 106/298 (35%), Positives = 157/298 (52%), Gaps = 11/298 (3%) Query: 47 INLGETSFMDGFSR-SGPGWTYLPALRYAQGNAIKDGSGRDAAAFKDPRIDVLTLINHLS 105 +N+G TSF DG GPG+ ++ L + + + D G AA+ D+ ++ L Sbjct: 31 VNMGGTSFFDGAPLPGGPGFYFVEYLTHYSASRMMDNGGNTAASPPSQTFDLTVPVSQLI 90 Query: 106 YTSP-IRIGDATLGLNALLPVVSLDGRFGQPGATLAGGGTSVGDLTISPSLQFDPVMGAT 164 Y R G+ LG ALLP V+ G + G +GDL LQFDP+MG Sbjct: 91 YVPEGARWGNTQLGFQALLPWVAQASVNDGMGNAMLKGERGIGDLAAGVWLQFDPIMGEQ 150 Query: 165 GPLYSQRLEFSFLLPTGRYDRSNDLNQGAGYYSLNPFWAATLLPTPRWEISWRLHYLYNF 224 GPL+SQR E + PTG YDR+ ++ G+ ++S +P+WA T+ +P+ S R +YL+N Sbjct: 151 GPLFSQRFELQVIAPTGHYDRTAAVSPGSNFWSFDPYWAVTVWASPKLSFSGRFNYLWNA 210 Query: 225 KNTQPAGSAPLAYQGQTVRDTQAGQAAWINLSTSYEVVRDVRLGLNSYYFKQLTDSKTNG 284 +N+ P A G TQAGQA N + YE+ + + GL+ Y+ KQ++D++ NG Sbjct: 211 RNSDPN-----AAFGSGATSTQAGQALHGNFAVEYEIRQGLVAGLSGYWLKQISDTRVNG 265 Query: 285 ADMAGSREQVLGVGLGAMFTIHRGDKHDVLWINSYTESHVRNRTRNSLILQARYAYEF 342 + G REQV+ +G AM + D L+ N Y E RNRT+ Q RY + F Sbjct: 266 VAVPGRREQVVALGPAAMVAL---SPKDFLFFNYYREFAARNRTQGDK-FQIRYDHHF 319 >PA2421 [C] COG4313 Protein involved in meta-pathway of phenol degradation Pae Pseudomonas aeruginosa Length = 306 Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 115/319 (36%), Positives = 151/319 (47%), Gaps = 24/319 (7%) Query: 25 FGADHALAQVNGMPPTVSQPQGINLGETSFMDGFSRSGPGWTYLPALRYAQGNAIKDGSG 84 FGA A + V+ P + LG TSFMDG SR PG + L+Y + N D G Sbjct: 9 FGALSAALCLEAHADAVALPP-LALGNTSFMDGVSR--PGMLFELPLQYVRANNASDAGG 65 Query: 85 RDAAAFKDPRIDVLTLINHLSYTSPIRIGDATLGLNALLPVVSLDGRF-GQPGATLAGGG 143 + R+ TL+ H +Y S + A G LLP+V LD G P G Sbjct: 66 HSVPGRQ--RVRGTTLLPHFAYLSQNTLLGAHYGAEVLLPLVRLDLDIDGGPD----GRR 119 Query: 144 TSVGDLTISP-SLQFDPVMGATGPLYSQRLEFSFLLPTGRYDRSNDLNQGAGYYSLNPFW 202 T GDL +SP LQ+ P P Y QRL F F LPTG YD+ +N G+ + NP + Sbjct: 120 TRQGDLIVSPLMLQWGPATLFGRP-YWQRLNFVFSLPTGDYDKDAAINTGSNTWIFNPHY 178 Query: 203 AATLLPTPRWEISWRLHYLYNFKNTQPAGSAPLAYQGQTVRDTQAGQAAWINLSTSYEVV 262 A T R E+S RLHY + +N P+ D Q GQA N S SY + Sbjct: 179 AFTWELGERLELSGRLHYAWISRNDDPSPRL-------GANDVQPGQALHANFSISYALD 231 Query: 263 RDVRLGLNSYYFKQLTDSKTNGADMAGSREQVLGVGLGAMFTIHRGDKHDVLWINSYTES 322 R+GL Y KQ++ + + A SREQV G+G G M++ R L+ N Y ES Sbjct: 232 PHWRIGLAGYQLKQISADRIDDHRQADSREQVFGIGPGVMYSQGR----QTLFANLYAES 287 Query: 323 HVRNRTR-NSLILQARYAY 340 RNR+ N L L+ A+ Sbjct: 288 GARNRSEGNQLTLRYLLAF 306 >PA2474 [C] COG4313 Protein involved in meta-pathway of phenol degradation Pae Pseudomonas aeruginosa Length = 303 Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 104/297 (35%), Positives = 148/297 (49%), Gaps = 20/297 (6%) Query: 46 GINLGETSFMDGFSRSGPGWTYLPALRYAQGNAIKDGSGRDAAAFKDPRIDVLTLINHLS 105 G+NLG+TSF+DG ++ PG + + + + D +G D R+ L +H + Sbjct: 27 GMNLGQTSFLDG--KALPGTLFQQFVNIYEADDFMDANGHRRPL--DNRLRTLLATSHFA 82 Query: 106 YTSPIRIGDATLGLNALLPVVSLDGRFGQPGATLAGGGTSVGDLTISPSLQFDPVMGATG 165 + S ++ A G L+PV+ D F +P A G +G+L +SP + P G Sbjct: 83 HISQHQLFGAYYGAEILVPVLLADPDF-EPHA---GSANGLGNLIVSPFILQWPQTELFG 138 Query: 166 PLYSQRLEFSFLLPTGRYDRSNDLNQGAGYYSLNPFWAATLLPTPRWEISWRLHYLYNFK 225 Y QRL +F LPTGRYDR +N G+ ++S NP +A T WE S RL YL K Sbjct: 139 RPYWQRLNLAFQLPTGRYDRHRAINPGSNHWSFNPHYALTWEFAEGWEASARLQYLLPGK 198 Query: 226 NTQPAGSAPLAYQGQTVRDTQAGQAAWINLSTSYEVVRDVRLGLNSYYFKQLTDSKTNGA 285 N PA PLA Q GQA N S S + RLGL+ Y +Q+TD + +G Sbjct: 199 NRDPA--PPLADDY-----LQPGQAFHANYSVSLALDAHWRLGLSGYSLRQITDERVDGH 251 Query: 286 DMAGSREQVLGVGLGAMFTIHRGDKHDVLWINSYTESHVRNRTRNSLILQARYAYEF 342 D SRE+V +G MF G L++N+Y E RNR+ S ++ RY+ F Sbjct: 252 DRPDSRERVDAIGPALMF----GWGKSRLFLNAYHEYGARNRSEGSRLI-LRYSQVF 303 >PA5325 [C] COG4313 Protein involved in meta-pathway of phenol degradation Pae Pseudomonas aeruginosa Length = 316 Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 106/252 (42%), Gaps = 36/252 (14%) Query: 92 DPRIDVLTLINHLSYTSPIRIGDATLGLNALLPVVSLDGRFGQPGATLAGGGTSVGDLTI 151 D +I +I L Y SP+RI LG P L R G L+ S+GD T Sbjct: 81 DVKISSDAIIPRLDYLSPLRIFGGRLGGYIAQPY--LRQRVAAFG--LSDERESMGDTTF 136 Query: 152 SPSLQFDPVMGATGPLYSQRLEFSFLLPTGRYDRSNDLNQGAGYYSLNPFWAATLLPTPR 211 +P + +D MG L + +PTG+YD N +Y+ P ++ T LPT R Sbjct: 137 APIILWD--MGKDLTLAAA---VEVTVPTGKYDAERLANTSNNFYTYKPLFSFTWLPTER 191 Query: 212 WEISWRLHYLYNFKNTQPAGSAPLAYQGQTVRDTQAGQAAWINLSTSYEVVRDVRLGLNS 271 E+S + Y +N +N D ++GQ + S SY V ++RLGLN Sbjct: 192 TELSLKATYSFNMENHDT--------------DYRSGQIFHFDYSASYRVTDNLRLGLNG 237 Query: 272 YYFKQLTDSKTNGADMA----------GSREQVLGVGLGAMFTIHRGDKHDVLWINSYTE 321 YY KQ TD K NG + G R QV +G T + ++ W E Sbjct: 238 YYLKQTTDDKQNGETVRVFGFGEEVDDGVRGQVFAIGPAVHLTFLKYASAEIRWAK---E 294 Query: 322 SHVRNRTRNSLI 333 V NR ++ Sbjct: 295 FDVENRPEGDML 306 >RSc1833 [C] COG4313 Protein involved in meta-pathway of phenol degradation Rso Ralstonia solanacearum Length = 297 Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 112/266 (42%), Gaps = 33/266 (12%) Query: 66 TYLPALRYAQGNAIKDGSGRDAAAFKDPRIDVLTLINHLSYTSPIRIGDATLGLNALLPV 125 Y A RY + ++ SG+ + +D ++DV L L + +P ++ L +A+ P+ Sbjct: 55 VYAGAARY---DTLRGNSGQ--SLLQDFKVDVNVLAPRLIWVTPAQVFGGQLAFHAIAPL 109 Query: 126 VSLDGRFGQPGATLAGGGTSVGDLTISPSLQFDPVMGATGPLYSQRLEFSFLLPTGRYDR 185 + +D F GA G +GD+T+ +L + P + PTG YD Sbjct: 110 LDVD--FRANGARFKSSG--LGDITLGTALGYH-----VSPALHYVIGLDVFAPTGHYDP 160 Query: 186 SNDLNQGAGYYSLNPFWAATLLPTPRWEISWRLHYLYNFKNTQPAGSAPLAYQGQTVRDT 245 + + G Y++ P A T + + ++ Y NF+NT+ DT Sbjct: 161 TAPSSLGKNYWTAQPLAAITYMQPTGFNGDLKVMYDLNFRNTR--------------TDT 206 Query: 246 QAGQAAWINLSTSYEVVRDVRLGLNSYYFKQLTDSKTNGADMAGSREQVLGVGLGAMFTI 305 ++GQA + S + + LG+ Y ++Q T+ + G A + + L VG + Sbjct: 207 RSGQAIHADYSAGWGIGNGWVLGVGGYVYQQTTNDQ--GPAAAQGKARALAVGPSIRYAN 264 Query: 306 HRGDKHDVLWINSYTESHVRNRTRNS 331 RG V W E VRNR S Sbjct: 265 DRGWLLTVKW---QKEFEVRNRPSGS 287