BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0143.p (542 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 332 2e-90 RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 318 1e-86 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 310 4e-84 RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 305 2e-82 RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 304 4e-82 >RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 332 bits (850), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 199/321 (61%), Positives = 245/321 (76%), Gaps = 3/321 (0%) Query: 196 LVAGSVLLAVAAAVLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVSIPLAKGDQHSLMAS 255 +V G+V LA+ LI+R+V LGGEPA A E+A +IA G+LAV + D++S++ + Sbjct: 196 VVGGAVTLAM---FLIIRNVQRGLGGEPAYATEIARRIADGDLAVRVQTRPDDRNSMLFA 252 Query: 256 LENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAASLEETASSMEEITST 315 + M+ QLT + IK SA+SI++A QIA GN DLS+RTEEQA+SLEETASSMEE+TS Sbjct: 253 MARMQQQLTGTIGHIKTSADSIASATQQIATGNADLSQRTEEQASSLEETASSMEELTSI 312 Query: 316 VEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYKITEIIATVEGIAFQT 375 V+QN NA Q LA +AS A KGGEVV RVV TM I+ S+ KI +II +EGIAFQT Sbjct: 313 VKQNADNARQASTLAVNASDIAVKGGEVVGRVVDTMAGINDSSKKIADIIGVIEGIAFQT 372 Query: 376 NILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGLIESSVQHVEAGQKLV 435 NILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA +AKEI+ LI SV VE G LV Sbjct: 373 NILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKVLISDSVGRVENGTTLV 432 Query: 436 DEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQMDEVTQQNAALVEESA 495 EAG +DEVV ++++V D+M EI+AAS+EQSSGI Q+N A++QMDEVTQQNAALVEE+A Sbjct: 433 AEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQNAALVEEAA 492 Query: 496 SAAQSMAQQANSQRDAVAVFR 516 +AA S+ +QA RDAVA FR Sbjct: 493 AAALSLEEQATLLRDAVASFR 513 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 318 bits (816), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 173/298 (58%), Positives = 235/298 (78%) Query: 220 GGEPAQAQELAAQIAQGNLAVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESIST 279 GGEP+ A + + +AQG+L+ I + D+ SL+A L+ M+A L+ IV ++++AES++T Sbjct: 216 GGEPSVAAQAVSAMAQGDLSRVIAVDADDRTSLLAKLKEMQASLSGIVATVRNNAESVAT 275 Query: 280 AASQIAVGNLDLSRRTEEQAASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQK 339 A++QIA GN DLS RTE+QA++L+ET+++M+E+ STV N +NA Q +QLA AS A + Sbjct: 276 ASAQIAQGNQDLSHRTEQQASALQETSATMDELGSTVGNNAENARQANQLASGASSVAAE 335 Query: 340 GGEVVERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVV 399 GGEVV +VVG MK I+ + KI +II ++GIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 336 GGEVVSQVVGMMKGINDGSKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 395 Query: 400 ATEVRSLAQRSASSAKEIRGLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEI 459 A EVRSLAQRSA++AKEI+ LI SSV+ VE G LVD AG TM+++V +IQ+V+++++EI Sbjct: 396 AAEVRSLAQRSAAAAKEIKALITSSVEQVEQGTTLVDRAGATMEQIVGAIQRVSNIVAEI 455 Query: 460 TAASNEQSSGISQINIAISQMDEVTQQNAALVEESASAAQSMAQQANSQRDAVAVFRI 517 ++AS EQSSG+SQ+ A+SQMDE TQQNAALVE+SA+AA S+ QA AVAVF++ Sbjct: 456 SSASAEQSSGVSQVGQAVSQMDEATQQNAALVEQSAAAASSLQGQAQQLVQAVAVFKL 513 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 310 bits (795), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 210/534 (39%), Positives = 311/534 (58%), Gaps = 38/534 (7%) Query: 1 MNKLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIVA--------NNQQGGLA 52 ++ +++ RL FA VV LL+ I+ VG+ + + IV+ +NQ Sbjct: 3 ISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQ----- 57 Query: 53 DVMNNSVRIRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMF--DQPDTTR 110 + NN + + + N+ L P + + +A A +L K+ DQ Sbjct: 58 -IKNNGYKANGI-LSNLLLVTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALF 115 Query: 111 REHELFDLIAQNAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDEL--- 167 +E FD + A L D E +L + +Q ++ +D++ Sbjct: 116 KEQ--FDARSAYGASVRKFF----ALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDH 169 Query: 168 --GRFEDELNNQASAAADTTYRSILTTTWTLVAGSVLLAVAAAVLIVRSVLHQLGGEPAQ 225 G E +++ A+ A+ + I+ L + LLA+A I R++ + Sbjct: 170 QAGEMEHDVSEAAAQGANAKIQMIV-----LAVLATLLAIATGAFITRTITRPIN----H 220 Query: 226 AQELAAQIAQGNLAVSIPLAKGDQ-HSLMASLENMRAQLTRIVDGIKHSAESISTAASQI 284 A LA +AQGNL + + D+ L+A+L++M L IV ++ ++I+ A+S++ Sbjct: 221 AMHLAEAVAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEV 280 Query: 285 AVGNLDLSRRTEEQAASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVV 344 A GN+DLS RTE+QA+SLEETA++ME++TSTV+QN NA + +LA +AS+ A KGG+ V Sbjct: 281 ASGNIDLSSRTEQQASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAV 340 Query: 345 ERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR 404 + + TM I+ S+ KI +II ++GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR Sbjct: 341 DEAIQTMSTINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVR 400 Query: 405 SLAQRSASSAKEIRGLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASN 464 SLAQRSA++AKEI+ LIE SV HV G V+EAG + +VV IQ V +++SEI+A+S Sbjct: 401 SLAQRSAAAAKEIKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSR 460 Query: 465 EQSSGISQINIAISQMDEVTQQNAALVEESASAAQSMAQQANSQRDAVAVFRIE 518 EQS GI QIN AI+QMD+ TQ+NA+LVEESA+AAQ++ QAN D V+ F++ Sbjct: 461 EQSDGIEQINEAITQMDKATQENASLVEESATAAQALQDQANQLADMVSTFKLH 514 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 305 bits (781), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 180/312 (57%), Positives = 238/312 (76%) Query: 213 RSVLHQLGGEPAQAQELAAQIAQGNLAVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKH 272 R + LGG+PA A E+A +IA G+L+V I D+ SL+ ++ MR L + + I+ Sbjct: 216 RGLQRALGGDPAYAAEVANRIAGGDLSVEIATRPDDRDSLLYAMGRMRGALVQTIGRIRG 275 Query: 273 SAESISTAASQIAVGNLDLSRRTEEQAASLEETASSMEEITSTVEQNTQNAGQGHQLARS 332 ++E+I TA +IA GNLDLS RTE+QA+SLEETAS+MEE+ STV+QN NA Q +QLA S Sbjct: 276 ASETIGTATREIASGNLDLSSRTEQQASSLEETASAMEELMSTVQQNADNANQANQLAVS 335 Query: 333 ASLHAQKGGEVVERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALNAAVEAARAGEQ 392 AS A +GG+VV RVV TM I+ S+ KI +II ++GIAFQTNILALNAAVEAARAGEQ Sbjct: 336 ASDVAVRGGDVVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 395 Query: 393 GRGFAVVATEVRSLAQRSASSAKEIRGLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQV 452 GRGFAVVA EVRSLAQRSA++AKEI+ LI+ SV +V+AG LV+EAG TM E+V S+++V Sbjct: 396 GRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRV 455 Query: 453 NDLMSEITAASNEQSSGISQINIAISQMDEVTQQNAALVEESASAAQSMAQQANSQRDAV 512 D++ EITAAS EQ SGI +++ A++Q+D+ TQQNAALVE++A+AAQS+ +QA+S V Sbjct: 456 TDIVGEITAASQEQRSGIEEVSHAVTQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVV 515 Query: 513 AVFRIEQPQPAV 524 A FR++ AV Sbjct: 516 AQFRLDPTMSAV 527 >RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 304 bits (778), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 184/307 (59%), Positives = 235/307 (76%) Query: 211 IVRSVLHQLGGEPAQAQELAAQIAQGNLAVSIPLAKGDQHSLMASLENMRAQLTRIVDGI 270 + R + QLGG+PA A ++AA+IA G+LA+ + GD+ S++ ++ M+ +LT + I Sbjct: 207 LARGLQRQLGGDPAYAADIAARIAAGDLAMRVETRPGDRDSVLFAMAQMQRELTGTISHI 266 Query: 271 KHSAESISTAASQIAVGNLDLSRRTEEQAASLEETASSMEEITSTVEQNTQNAGQGHQLA 330 KHSA+SI++A QIA GN DLS+RTE+QA+SLEETASSMEE+TS V+QN NA Q LA Sbjct: 267 KHSADSIASATQQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQASTLA 326 Query: 331 RSASLHAQKGGEVVERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALNAAVEAARAG 390 +AS A KGGEVV RVV TM I+ S+ KI +II +EGIAFQTNILALNAAVEAARAG Sbjct: 327 VNASDVAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIAFQTNILALNAAVEAARAG 386 Query: 391 EQGRGFAVVATEVRSLAQRSASSAKEIRGLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQ 450 EQGRGFAVVA EVRSLAQRSA +AKEI+ LI SV V G LV+EAG +DEVV +++ Sbjct: 387 EQGRGFAVVAGEVRSLAQRSAGAAKEIKELIGDSVGRVRNGTALVEEAGAVIDEVVVAVK 446 Query: 451 QVNDLMSEITAASNEQSSGISQINIAISQMDEVTQQNAALVEESASAAQSMAQQANSQRD 510 +V D+M EI+AAS EQSSGI Q+N A++QMD+VTQQNAALVE++A+AA S+ +QA R Sbjct: 447 RVTDIMGEISAASAEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAALSLEEQAQVLRT 506 Query: 511 AVAVFRI 517 AV F++ Sbjct: 507 AVGRFQM 513