BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0135.p         (162 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2414 [L] COG2927 DNA polymerase III, chi subunit Rso Ralstoni...   130   1e-30
PA3832 [L] COG2927 DNA polymerase III, chi subunit Pae Pseudomon...    96   4e-20
XF0136 [L] COG2927 DNA polymerase III, chi subunit Xfa Xylella f...    69   5e-12
NMB1568 [L] COG2927 DNA polymerase III, chi subunit Nme Neisseri...    68   1e-11
NMA1757 [L] COG2927 DNA polymerase III, chi subunit NmA Neisseri...    67   1e-11

>RSc2414 [L] COG2927 DNA polymerase III, chi subunit Rso Ralstonia
           solanacearum
          Length = 142

 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 97/138 (70%), Gaps = 3/138 (2%)

Query: 24  MTRIDFHSNVPQKIAYVCRLVRKARATGVNIVVRSPDAAQLQQLDQALWSFSEQDFLPHV 83
           MTR+DFHSNVP K+AY CRLVRKA   G  ++V    AA L+  D  LW+FS+ DFLPH 
Sbjct: 1   MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIVVGNRAA-LEAFDAQLWTFSQLDFLPHC 59

Query: 84  MAKDPLAAQTAIILT--SDDAAELPHHQLLINLGADTPAHFARFERLLEIISADDADKAA 141
             +  LAAQT I+L   S+   + PHH +L+NL   TP  FARF RL+EI+  D+A++AA
Sbjct: 60  GLRHRLAAQTPILLADASEPLDDAPHHDILVNLSDATPPLFARFARLIEIVGDDEAERAA 119

Query: 142 GRDRYRFYKERGYPLTHH 159
            RDR+RFY++RGYP+ HH
Sbjct: 120 ARDRFRFYRDRGYPIQHH 137


>PA3832 [L] COG2927 DNA polymerase III, chi subunit Pae Pseudomonas
           aeruginosa
          Length = 142

 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 7/140 (5%)

Query: 24  MTRIDFH----SNVPQKIAYVCRLVRKARATGVNIVVRSPDAAQLQQLDQALWSFSEQDF 79
           MTR+DF+    ++   ++   CRL  KA   G+ + +   D AQ  +LD  LWSF  + F
Sbjct: 1   MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMQVYLHCADEAQRSELDGRLWSFRGEAF 60

Query: 80  LPHVMAKDPLAAQTAIILTSDDAAELPHHQLLINLGADTPAHFARFERLLEIISADDADK 139
           +PH +A++   A  A+ L         H  LLINL  + P     F R+ E++  + A +
Sbjct: 61  IPHSLAEEDAEAPVALGLGEPPGN---HRDLLINLTLEAPGFVPNFSRVAELVVEEPAIR 117

Query: 140 AAGRDRYRFYKERGYPLTHH 159
            A RD++RFY+E+GYPL  H
Sbjct: 118 QAARDKFRFYREQGYPLQDH 137


>XF0136 [L] COG2927 DNA polymerase III, chi subunit Xfa Xylella fastidiosa
           9a5c
          Length = 141

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 7/141 (4%)

Query: 24  MTRIDFH-----SNVPQKIAYVCRLVRKARATGVNIVVRSPDAAQLQQLDQALWSFSEQD 78
           M R DF+       + Q +  VC LVRKA  T    ++ + D AQ + LD  LW+F    
Sbjct: 1   MARADFYLIAKPRFLQQPLELVCALVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDA 60

Query: 79  FLPHVMAKDPLAAQTAIILTSDDAAELPHHQLLINLGADTPAHFARFERLLEIISADDAD 138
           ++PH +A          +L +   ++ P   L+INL  D P      ER+LE++ AD A 
Sbjct: 61  YIPHQIAGSDEDDDITPVLIATPDSDTPSRPLVINLR-DAPWD-GPCERVLEVVPADPAA 118

Query: 139 KAAGRDRYRFYKERGYPLTHH 159
           +   R+R++ YK RG  +  H
Sbjct: 119 REPLRERWKHYKARGLHMNKH 139


>NMB1568 [L] COG2927 DNA polymerase III, chi subunit Nme Neisseria
           meningitidis MC58
          Length = 146

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 75/141 (53%), Gaps = 6/141 (4%)

Query: 24  MTRIDFHSNVPQKIAYVCRLVRKARATGVNIVVRSPDAAQLQQLDQALWSFSEQDFLPHV 83
           M +  F+++V Q   + CRL+ +A   G  I+V S    QLQ+LD+ LW +  + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60

Query: 84  M--AKDPLAAQTAIILT-SDDAAELPHHQLLINLGADTPAHFARF--ERLLEIISADDAD 138
           +   ++ + ++ +++L    +   +P    ++NL +D   + A     R+LEI+     +
Sbjct: 61  IWETEEAMPSEPSVLLACGGNLPRIPEGMTVLNL-SDGFWNTAPVLPARVLEIVGNSLEE 119

Query: 139 KAAGRDRYRFYKERGYPLTHH 159
            A  R+R+  Y+  G+ + HH
Sbjct: 120 LADARERFTAYRRSGFAIEHH 140


>NMA1757 [L] COG2927 DNA polymerase III, chi subunit NmA Neisseria
           meningitidis Z2491
          Length = 146

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 75/141 (53%), Gaps = 6/141 (4%)

Query: 24  MTRIDFHSNVPQKIAYVCRLVRKARATGVNIVVRSPDAAQLQQLDQALWSFSEQDFLPHV 83
           M +  F+++V Q   + CRL+ +A   G  I+V S    QLQ+LD+ LW +  + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60

Query: 84  M--AKDPLAAQTAIILT-SDDAAELPHHQLLINLGADTPAHFARF--ERLLEIISADDAD 138
           +   ++ + ++ +++L    +   +P    ++NL +D   + A     R+LEI+     +
Sbjct: 61  IWETEEAMPSEPSVLLACGGNLPRIPEGMAVLNL-SDGFWNTAPVLPARVLEIVGNSLEE 119

Query: 139 KAAGRDRYRFYKERGYPLTHH 159
            A  R+R+  Y+  G+ + HH
Sbjct: 120 LADARERFTAYRRSGFAIEHH 140