BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0112.p (329 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2554 [E] COG0078 Ornithine carbamoyltransferase Rso Ralstonia... 385 e-106 PA3537 [E] COG0078 Ornithine carbamoyltransferase Pae Pseudomona... 245 8e-65 AF1255 [E] COG0078 Ornithine carbamoyltransferase Afu Archaeoglo... 210 4e-54 BH2894 [E] COG0078 Ornithine carbamoyltransferase Bha Bacillus h... 210 4e-54 BS_argF [E] COG0078 Ornithine carbamoyltransferase Bsu Bacillus ... 207 2e-53 >RSc2554 [E] COG0078 Ornithine carbamoyltransferase Rso Ralstonia solanacearum Length = 308 Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust. Identities = 176/251 (70%), Positives = 210/251 (83%), Gaps = 1/251 (0%) Query: 3 IKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSFEA 62 IKHYLQF DF+L+EY Y+++RSR++K KFKNYE H L DRTL M+FEKNSTRTRLSFEA Sbjct: 7 IKHYLQFKDFSLEEYAYLLDRSRILKAKFKNYETWHPLHDRTLAMIFEKNSTRTRLSFEA 66 Query: 63 GMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRVPV 122 G+HQ+GG A++LNTRDSQLGRGEP+EDAAQV+SRM D+IMIRT+GQEIIERFA HSRVPV Sbjct: 67 GIHQLGGHAVFLNTRDSQLGRGEPIEDAAQVISRMTDIIMIRTFGQEIIERFATHSRVPV 126 Query: 123 INGLTNEQHPCQVLADVFTYIEHRGSIQGKIVAWVGDANNMLYSWLQAAEVFGFHVNVST 182 INGLTNE HPCQVLAD+FT+IEHRG IQGK V WVGDANNM Y+W+QAAE+ GF + S Sbjct: 127 INGLTNEYHPCQVLADIFTFIEHRGPIQGKTVTWVGDANNMAYTWIQAAEILGFRFHFSA 186 Query: 183 PKGYDVDPAHVSPGNKNYT-FFADPADACQDADLVTTDVWTSMGFEAENNARLKAFDGWI 241 PKGY +DP V+ ++ + F +P +AC+ A LVTTDVWTSMG+EAEN AR KAF W+ Sbjct: 187 PKGYQLDPVMVADSSRPFVHVFENPLEACEGAHLVTTDVWTSMGYEAENEARKKAFGDWM 246 Query: 242 VDQAKMARAKP 252 V +A M RA+P Sbjct: 247 VTEAMMQRAQP 257 >PA3537 [E] COG0078 Ornithine carbamoyltransferase Pae Pseudomonas aeruginosa Length = 305 Score = 245 bits (626), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 132/281 (46%), Positives = 176/281 (62%), Gaps = 23/281 (8%) Query: 1 MAIKHYLQFSDFTLDEYEYVIERSRVIKRKFKN----YEPHHTLADRTLVMVFEKNSTRT 56 M+++H+L F D++ +E +I R +K +N YEP L R L MVFEK STRT Sbjct: 1 MSVRHFLSFMDYSPEELIGLIRRGSELK-DLRNRGVLYEP---LKSRVLGMVFEKASTRT 56 Query: 57 RLSFEAGMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAK 116 RLSFEAGM Q+GG AI+L+ RD+QLGRGEP+ D+A+VMSRM D +MIRT+ + FA Sbjct: 57 RLSFEAGMIQLGGQAIFLSPRDTQLGRGEPIGDSARVMSRMLDGVMIRTFAHATLTEFAA 116 Query: 117 HSRVPVINGLTNEQHPCQVLADVFTYIEHRGSIQGKIVAWVGDANNMLYSWLQAAEVFGF 176 HS+VPVINGL+++ HPCQ+LAD+ T+ EHRGSIQGK VAW+GD NNM S+++AA F F Sbjct: 117 HSKVPVINGLSDDLHPCQLLADMQTFHEHRGSIQGKTVAWIGDGNNMCNSYIEAALKFDF 176 Query: 177 HVNVSTPKGYDVDPAHVSPGNKNYTFFADPADACQDADLVTTDVWTSMGFEAENNARLKA 236 + V+ P+GY+ V+ DP +A A LV+TDVW SMG E E AR+ Sbjct: 177 QLRVACPEGYEPKAEFVALAGDRLRVVRDPREAVAGAHLVSTDVWASMGQEDEAAARIAL 236 Query: 237 FDGWIVDQAKMARAKPXRGPGQATNRSGARQEGCTVHALPA 277 F + V+ A + GA + +H LPA Sbjct: 237 FRPYQVNAALL---------------DGAADDVLFMHCLPA 262 >AF1255 [E] COG0078 Ornithine carbamoyltransferase Afu Archaeoglobus fulgidus Length = 307 Score = 210 bits (534), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 107/252 (42%), Positives = 154/252 (61%), Gaps = 3/252 (1%) Query: 3 IKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSFEA 62 +KH L +D DE +++ + +K + L +++L M+FE STRTR+SFE Sbjct: 1 MKHLLSMADLEKDELFEILKLAEKLKEERYKGVVTDYLKNKSLAMIFELPSTRTRVSFEV 60 Query: 63 GMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRVPV 122 M +GG A+YL + QLGRGEP++D A+V+SR +M+R IE FA++S VPV Sbjct: 61 AMTDLGGHALYLGWDELQLGRGEPIKDTARVLSRYVHAVMMRVREHSTIEEFARYSTVPV 120 Query: 123 INGLTNEQHPCQVLADVFTYIEHRGSIQGKIVAWVGDANNMLYSWLQAAEVFGFHVNVST 182 INGL+N +HPCQV+AD+ T E+RG + +AWVGD NN+ S + AA + G + +ST Sbjct: 121 INGLSNLEHPCQVIADLLTIYEYRGDFKDVTLAWVGDGNNVCNSMILAAALTGMKMVIST 180 Query: 183 PKGYDVDPAHVSPGNK---NYTFFADPADACQDADLVTTDVWTSMGFEAENNARLKAFDG 239 P+ YD +P V + F DP +A ++AD++ TDVWTSMG EAE ARLKAF Sbjct: 181 PENYDPNPEIVKKAEEMGAKLRFVRDPKEAVKEADVIYTDVWTSMGQEAEKEARLKAFQP 240 Query: 240 WIVDQAKMARAK 251 + V + +K Sbjct: 241 YQVSDELLKFSK 252 >BH2894 [E] COG0078 Ornithine carbamoyltransferase Bha Bacillus halodurans Length = 319 Score = 210 bits (534), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 107/252 (42%), Positives = 155/252 (61%), Gaps = 7/252 (2%) Query: 7 LQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSFEAGMHQ 66 L D+T +E + ++ ++ +K+K KN EP L ++L M+FE STRTR+SFE GM Q Sbjct: 17 LTLLDYTPEEVQQLLTQALELKQKAKNGEPTPYLTGKSLGMIFENASTRTRVSFEVGMTQ 76 Query: 67 MGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRVPVINGL 126 +GG A++L+ +D Q+GRGEP++D A V+SR D IMIRT E +E A ++ VPVIN L Sbjct: 77 LGGHALFLSPKDLQIGRGEPIKDTANVLSRYVDAIMIRTNSHESVEELAHYATVPVINAL 136 Query: 127 TNEQHPCQVLADVFTYIEHRGSIQGKIVAWVGDANNMLYSWLQAAEVFGFHVNVSTPKGY 186 T+ HPCQ LAD T +E + ++ GK +A++GD NN+ +S L G V V+TPKGY Sbjct: 137 TDAYHPCQALADALTILEKKETLIGKKLAYIGDGNNVCHSLLAIGAKTGMDVTVATPKGY 196 Query: 187 DVDP-----AHVSPGNKNYTFF--ADPADACQDADLVTTDVWTSMGFEAENNARLKAFDG 239 +VD A + T +P A ++AD + TDVW SMG+EAE + R + F Sbjct: 197 EVDQEIFQRATEAAKETGATLVQTTNPQVAAENADAIYTDVWASMGYEAEQSEREEVFQP 256 Query: 240 WIVDQAKMARAK 251 + V+ + AK Sbjct: 257 YQVNDQLLTLAK 268 >BS_argF [E] COG0078 Ornithine carbamoyltransferase Bsu Bacillus subtilis Length = 319 Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 101/217 (46%), Positives = 146/217 (67%), Gaps = 7/217 (3%) Query: 43 RTLVMVFEKNSTRTRLSFEAGMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIM 102 +TL M+FEK+STRTR+SFEAGM Q+GG+A++L+ +D QLGRGE V D A+V+S D IM Sbjct: 47 KTLAMIFEKSSTRTRVSFEAGMAQLGGSALFLSQKDLQLGRGETVADTAKVLSGYVDAIM 106 Query: 103 IRTYGQEIIERFAKHSRVPVINGLTNEQHPCQVLADVFTYIEHRGSIQGKIVAWVGDANN 162 IRT+ E +E AK + +PVINGLT++ HPCQ LAD+ T E +G ++G VA++GD NN Sbjct: 107 IRTFEHEKVEELAKEADIPVINGLTDKYHPCQALADLLTIKEIKGKLKGVKVAYIGDGNN 166 Query: 163 MLYSWLQAAEVFGFHVNVSTPKGYDV-DPA------HVSPGNKNYTFFADPADACQDADL 215 + +S + G +++++PKGY+V D A + + T DP +A +DAD+ Sbjct: 167 VAHSLMIGCAKMGCDISIASPKGYEVLDEAAEAAKTYALQSGSSVTLTDDPIEAVKDADV 226 Query: 216 VTTDVWTSMGFEAENNARLKAFDGWIVDQAKMARAKP 252 + +DV+TSMG EAE RL F + V+ A ++ AKP Sbjct: 227 IYSDVFTSMGQEAEEQERLAVFAPYQVNAALVSHAKP 263