BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0080.p         (171 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2459 [MU] COG0597 Lipoprotein signal peptidase Rso Ralstonia ...   237   1e-62
NMB1832 [MU] COG0597 Lipoprotein signal peptidase Nme Neisseria ...   140   1e-33
NMA0623 [MU] COG0597 Lipoprotein signal peptidase NmA Neisseria ...   139   2e-33
YPO0476 [MU] COG0597 Lipoprotein signal peptidase Ype Yersinia p...   138   7e-33
VC0683 [MU] COG0597 Lipoprotein signal peptidase Vch Vibrio chol...   135   3e-32

>RSc2459 [MU] COG0597 Lipoprotein signal peptidase Rso Ralstonia
           solanacearum
          Length = 173

 Score =  237 bits (604), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/173 (64%), Positives = 141/173 (81%), Gaps = 3/173 (1%)

Query: 1   MATKKRSSSSSASSST---QGLLPWLGIATIVLLLDQLSKITILKLFHYGDSLPVTGFFN 57
           MAT+    S +A S +    G+ PWLG+  I +LLDQL+KI ILK F YG+S P+TGFFN
Sbjct: 1   MATRNNGKSKAAGSKSGGGHGVGPWLGLGVIWILLDQLTKIAILKTFAYGESRPITGFFN 60

Query: 58  LVLVYNKGAAFSFLAASGGWQRYLFTAIGIGAAVFIVHLLRKHPGQRMFCWALALILGGA 117
           LVL YN+GAAFSFLAA+GGWQR+ FT +G+ AA+FIV LL++H GQ++FC+ALALILGGA
Sbjct: 61  LVLAYNRGAAFSFLAAAGGWQRWFFTGLGVAAALFIVWLLKRHSGQKLFCFALALILGGA 120

Query: 118 IGNVIDRVVYGHVIDFLDVYVGNWHWPAFNIADSAICVGAVLFVVDELRRVSR 170
           +GNVIDR+VYGHV+DFLD ++  +HWPAFN+AD  IC+GAVL ++DELRRV R
Sbjct: 121 LGNVIDRLVYGHVVDFLDFHLRGYHWPAFNVADCGICIGAVLLIIDELRRVRR 173


>NMB1832 [MU] COG0597 Lipoprotein signal peptidase Nme Neisseria
           meningitidis MC58
          Length = 175

 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 109/167 (65%), Gaps = 7/167 (4%)

Query: 6   RSSSSSASSSTQGLLPWLGIATIVLLLDQLSKITILKLFHYGDSLPV-TGFFNLVLVYNK 64
           ++ SSS SS T+  +  L +A IVL  DQ SK  +L  F Y + + V   FF+L LVYN 
Sbjct: 9   KNMSSSVSSKTRYWV--LALAAIVL--DQWSKWAVLSSFQYRERVNVIPSFFDLTLVYNP 64

Query: 65  GAAFSFLAASGGWQRYLFTAIGIGAAVFIVHLLRKHPGQRMFCWALALILGGAIGNVIDR 124
           GAAFSFLA  GGWQ+Y F  + +  + ++V  + +     +     A+I+GGA+GNVIDR
Sbjct: 65  GAAFSFLADQGGWQKYFFLVLAVAVSAYLVRAILRDEFATLGKTGAAMIIGGALGNVIDR 124

Query: 125 VVYGHVIDFLDVYVGNWHWPAFNIADSAICVGAVLFVVDELRRVSRK 171
           +++GHV+DFL  Y  NW +PAFNIADS ICVGAVL V+D +  V RK
Sbjct: 125 LIHGHVVDFLLFYWQNWFYPAFNIADSFICVGAVLAVLDNI--VHRK 169


>NMA0623 [MU] COG0597 Lipoprotein signal peptidase NmA Neisseria
           meningitidis Z2491
          Length = 165

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 107/164 (65%), Gaps = 7/164 (4%)

Query: 9   SSSASSSTQGLLPWLGIATIVLLLDQLSKITILKLFHYGDSLPV-TGFFNLVLVYNKGAA 67
           SSS SS T+  +  L +A IVL  DQ SK  +L  F Y + + V   FF+L LVYN GAA
Sbjct: 2   SSSVSSKTRYWV--LALAAIVL--DQWSKWAVLSSFQYRERVNVIPSFFDLTLVYNPGAA 57

Query: 68  FSFLAASGGWQRYLFTAIGIGAAVFIVHLLRKHPGQRMFCWALALILGGAIGNVIDRVVY 127
           FSFLA  GGWQ+Y F  + +  + ++V  + +     +     A+I+GGA+GNVIDR+++
Sbjct: 58  FSFLADQGGWQKYFFLVLAVAVSAYLVRAILRDEFATLGKTGAAMIIGGALGNVIDRLIH 117

Query: 128 GHVIDFLDVYVGNWHWPAFNIADSAICVGAVLFVVDELRRVSRK 171
           GHV+DFL  Y  NW +PAFNIADS ICVGAVL V+D +  V RK
Sbjct: 118 GHVVDFLLFYWQNWFYPAFNIADSFICVGAVLAVLDNI--VHRK 159


>YPO0476 [MU] COG0597 Lipoprotein signal peptidase Ype Yersinia pestis
          Length = 169

 Score =  138 bits (347), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 96/145 (66%), Gaps = 1/145 (0%)

Query: 20  LPWLGIATIVLLLDQLSKITILKLFHYGDSLPVTGFFNLVLVYNKGAAFSFLAASGGWQR 79
           L WL +A +V++LD  SK  ++  F   +S+P+  FFNL    N GAAFSFLA   GWQR
Sbjct: 10  LRWLWLAVVVVILDISSKQWVMAHFALYESVPLIPFFNLTYAQNFGAAFSFLADKSGWQR 69

Query: 80  YLFTAIGIG-AAVFIVHLLRKHPGQRMFCWALALILGGAIGNVIDRVVYGHVIDFLDVYV 138
           + F  I IG + V +V + R    QR+   A ALI+GGA+GN+ DR+V+G V DFLD Y+
Sbjct: 70  WFFAGIAIGISVVLMVMMYRSTAKQRLINCAYALIIGGALGNLYDRLVHGAVNDFLDFYI 129

Query: 139 GNWHWPAFNIADSAICVGAVLFVVD 163
            NWH+P FN+AD AIC+GA L + +
Sbjct: 130 NNWHFPTFNLADVAICIGAALVIFE 154


>VC0683 [MU] COG0597 Lipoprotein signal peptidase Vch Vibrio cholerae
          Length = 171

 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 103/161 (63%), Gaps = 3/161 (1%)

Query: 9   SSSASSSTQGLLPWLGIATIVLLLDQLSKITILKLFHYG--DSLPVTGFFNLVLVYNKGA 66
           S+S+ +  Q  L WL +A +V + D   K+ ++    YG  + + V  FFNL+ V+N GA
Sbjct: 2   SNSSLALKQSGLRWLWLALLVFIADITIKLIVMDNMGYGWANRIEVLPFFNLLYVHNYGA 61

Query: 67  AFSFLAASGGWQRYLFTAIGIGAAVFIVHLLRKHPG-QRMFCWALALILGGAIGNVIDRV 125
           AFSFL+   GWQR+LFT I       + + +R+ P   +    A ALI+GGA+GNV DR+
Sbjct: 62  AFSFLSDQEGWQRWLFTGIAFVVTGMLAYWMRRLPASDKWNNIAYALIIGGAVGNVFDRI 121

Query: 126 VYGHVIDFLDVYVGNWHWPAFNIADSAICVGAVLFVVDELR 166
           V+G V+D+LD Y G +HWPAFN+ADS IC+GA + ++D  R
Sbjct: 122 VHGFVVDYLDFYWGTYHWPAFNLADSTICIGAAMIILDGFR 162