BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0056.p (431 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 305 2e-82 PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 273 4e-73 PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae... 272 1e-72 PA1600 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 269 1e-71 SMb20402 [C] COG2010 Cytochrome c, mono- and diheme variants Sme... 226 1e-58 >PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 439 Score = 305 bits (780), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 175/393 (44%), Positives = 231/393 (58%), Gaps = 19/393 (4%) Query: 50 QGQYLARAGNCMACHTARGGAPYAGGRAIASPFGTLYTSNITPDKTTGIGQWSADDFWRA 109 QG+YLARAG+C+ACHTAR G P+AGG + +P G +Y++NITPD+ TGIG +S +DF RA Sbjct: 30 QGEYLARAGDCVACHTARDGKPFAGGLPMETPIGAVYSTNITPDRKTGIGDYSFEDFDRA 89 Query: 110 LHHGRGKEGQFLYPAFPYTSYTRLSRADSDALFAY-LQSLPPVARANQTHALRFPYDQRM 168 + HG + G LYPA PY SY R+S AD AL+AY + + PV + N+ + +P R Sbjct: 90 VRHGVARSGDTLYPAMPYPSYARVSEADMRALYAYFMHGVEPVEQPNKASDIPWPLSMRW 149 Query: 169 LLGLWRALYFTPQ--SYQPDPRQDAQWNRGAYLVQGAGHCSACHSARNRLGASIEPLALA 226 L WR F P+ +Q QD RGAYLV+G GHC ACH+ R LG + LA + Sbjct: 150 PLAFWR-WTFAPEVKDFQAAAGQDPVLARGAYLVEGLGHCGACHTPRG-LGMQEKALAAS 207 Query: 227 GGV------IPALQWYAPPLHGG-ADGLQDWSTADIAALLKTGVSPHAVTLGPMSEIVGR 279 G P W A L G GL WS AD+ + L+TG S + G MS++V Sbjct: 208 DGAAYLSGSAPLENWIAKSLRGDHRTGLGSWSEADLVSFLRTGRSERSAVFGGMSDVVVH 267 Query: 280 SLQYLNDADVSAMAVYLKSLPASAADDAARPASVEPAEAERIM-----KQGKQLYGTLCV 334 S+QY+ DAD++A+A YLKSLP AD A +P + + A+ + K G LY C Sbjct: 268 SMQYMTDADLTAIARYLKSLP--PADPADQPHVYDESVAQALFHGDDSKTGAALYVDNCG 325 Query: 335 DCHGGKGQGSAPDYPPLAGNRAIAGPHPANAVRAVLNGGFPPSTAGNPYPFGMPPFGPQL 394 CH G+G A +P LAGN + G P + V VL GG P+T P F MPPFG ++ Sbjct: 326 ACHRTDGKGYARVFPALAGNPVVTGSDPTSLVHIVLKGGTLPATHQAPSSFTMPPFGWRM 385 Query: 395 SDQEVAAVVSYVRNSWGNQGGLVSAAEVNRYRS 427 +DQE+A VV+++R SWGNQ VS EV R R Sbjct: 386 NDQEIADVVNFIRTSWGNQAPSVSVDEVRRLRK 418 >PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 415 Score = 273 bits (699), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 150/383 (39%), Positives = 216/383 (56%), Gaps = 13/383 (3%) Query: 48 LAQGQYLARAGNCMACHTARGGAPYAGGRAIASPFGTLYTSNITPDKTTGIGQWSADDFW 107 + +G+YLARA +CMACHTA GGAP+AGG I SPFGT+Y +NITPDK GIG +SAD+F+ Sbjct: 30 VKRGEYLARAADCMACHTAEGGAPFAGGLPIQSPFGTIYGTNITPDKEHGIGAYSADEFF 89 Query: 108 RALHHGRGKEGQFLYPAFPYTSYTRLSRADSDALFAYLQSLPPVARANQTHALRFPYDQR 167 AL G+ K+G +LYPA PYTSY + R D+DA++AYL + P+AR +L FP++ R Sbjct: 90 AALTEGKRKDGAYLYPAMPYTSYHLIEREDADAIYAYLMAQEPIARPAPQTSLSFPFNVR 149 Query: 168 MLLGLWRALYFTPQSYQPDPRQDAQWNRGAYLVQGAGHCSACHSARNRLGASIEPLALAG 227 M L W LY QP+ + W RG Y+V+ GHC CH+ RN GA + L+G Sbjct: 150 MGLAGWNLLYGKSVRLQPEEGRSEAWKRGQYMVEVLGHCGECHTPRNLAGALEQDKRLSG 209 Query: 228 GVIPALQWYAPPLHGGADGLQDWSTADIAALLKTGVSPHAVTLGPMSEIVGRSLQYLNDA 287 G++ + AP L G + W+ D+A+ LK G+S M +V S Q+L+D Sbjct: 210 GLLNG--YLAPSLLPGDLAARGWTQPDLASFLKHGMSAQGSMFNEMFPVVHHSTQHLDDG 267 Query: 288 DVSAMAVYLKSLPASAADDAARPASVEPAEAERIM----KQGKQLYGTLCVDCHGGKGQG 343 D++AMA YL D PA V A E + K+G+Q Y +C CHGG+G+G Sbjct: 268 DLAAMATYLLG-------DQPPPAKVVQALPEAQLNDSGKRGRQQYLNVCAGCHGGEGEG 320 Query: 344 SAPDYPPLAGNRAIAGPHPANAVRAVLNGGFPPSTAGNPYPFGMPPFGPQLSDQEVAAVV 403 + GN + P N +R + +G G MP F +L D+++ ++ Sbjct: 321 KPHIAVAMNGNTTLRLQDPRNLLRVIEDGIVEQQFTGFERMQPMPGFAGKLDDEQLTDLL 380 Query: 404 SYVRNSWGNQGGLVSAAEVNRYR 426 +Y+R +WG G + +V + + Sbjct: 381 NYLRQTWGGLPGDLGPQQVAQLK 403 >PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 441 Score = 272 bits (695), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 167/434 (38%), Positives = 231/434 (53%), Gaps = 40/434 (9%) Query: 7 FKSLGVLAALLIALPAAVIGWQWLGPEERGAATPAPDPTHQLAQGQYLARAGNCMACHTA 66 F LG+L AL +P A+ P D + +G+Y+A+ G+C+ACHT Sbjct: 5 FPRLGLLGALCSIVPLL------------HASEPTTDAA-LIEKGRYVAQLGDCIACHTG 51 Query: 67 RGGAPYAGGRAIASPFGTLYTSNITPDKTTGIGQWSADDFWRALHHGRGKEGQFLYPAFP 126 GAP AGG + +P GT+Y++NITPD+ TGIG++S ++F RA+ G EG LYPA P Sbjct: 52 PQGAPMAGGLELKTPMGTIYSTNITPDRETGIGRYSFEEFDRAMRKGVTAEGVNLYPAMP 111 Query: 127 YTSYTRLSRADSDALFAYL-QSLPPVARANQTHALRFPYDQRMLLGLWRALYFTPQSYQP 185 Y SY ++S D AL+AYL + PV +AN A+ +P++QR L LW + + P Sbjct: 112 YPSYAKISEEDMRALYAYLMHGVQPVTQANTPSAMSWPFNQRWGLSLWNWAFLDDAPFTP 171 Query: 186 DPRQDAQWNRGAYLVQGAGHCSACHSARNRLGASIEPLA-----------LAGGVIPALQ 234 D NRGAYLVQG GHC ACH+ R G + + A LAG + Q Sbjct: 172 SSDADPVINRGAYLVQGLGHCGACHTPR---GIAFQEKAMSEAGRSGQFYLAGETVE--Q 226 Query: 235 WYAPPLHGGADGLQDWSTADIAALLKTGVSPHAVTLGPMSEIVGRSLQYLNDADVSAMAV 294 W A L W+ D LLKTG + A G M++++ S Q+ +D D+ A+A Sbjct: 227 WQALSLR------NLWTVEDTVQLLKTGQNRFATVSGSMTDVIHHSTQHFSDDDLLAIAS 280 Query: 295 YLKSLPASAADDAARPASVEP--AEAERIMKQGKQLYGTLCVDCHGGKGQGSAPDYPPLA 352 YLKSLPA DD P S P A + +G Y C DCH G G +PPLA Sbjct: 281 YLKSLPA-GKDDLPMPDSERPLAAPVDLYSSRGGLGYAQFCSDCHRKDGSGVPGMFPPLA 339 Query: 353 GNRAIAGPHPANAVRAVLNGGFPPSTAGNPYPFGMPPFGPQLSDQEVAAVVSYVRNSWGN 412 GN +A +P+ + L G TA + + MP F QL D+E+A ++S+VR+SWGN Sbjct: 340 GNPTVASANPSTLLHITLTGWKTAQTATHSRVYTMPGFA-QLEDREIAEILSFVRSSWGN 398 Query: 413 QGGLVSAAEVNRYR 426 QG + A +V + R Sbjct: 399 QGSSIDAGQVKKLR 412 >PA1600 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 433 Score = 269 bits (687), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 165/417 (39%), Positives = 228/417 (54%), Gaps = 37/417 (8%) Query: 17 LIALPAAVIGWQW---LGPEERGAATPAPDPTHQLAQGQYLARAGNCMACHTARGGAPYA 73 L+AL A +G+ W + P E TP P Q+A+G+ LA G+C CHT GG A Sbjct: 15 LVALAAIALGYAWQPAIAPLE---GTPGPFSAEQIARGERLAALGDCAVCHTREGGPRNA 71 Query: 74 GGRAIASPFGTLYTSNITPDKTTGIGQWSADDFWRALHHGRGKEGQFLYPAFPYTSYTRL 133 GGRA+ +PFGT+Y+SN+TPD+ +GIG WS F RA+ HG ++G +LYPAFPYT++TR Sbjct: 72 GGRALPTPFGTIYSSNLTPDRASGIGGWSYPAFERAMRHGVARDGSYLYPAFPYTAFTRT 131 Query: 134 SRADSDALFAYLQSLPPVARANQTHALRFPYDQRMLLGLWRALYFTPQSYQPDPRQDAQW 193 D AL+AYL S P V + L FP+DQR L+ W L+ P +Y+ +P ++ QW Sbjct: 132 RDEDLKALYAYLMSQPAVHSETPANQLPFPFDQRQLMAGWNLLFLDPGAYRDEPTRNQQW 191 Query: 194 NRGAYLVQGAGHCSACHSARNRLGASIEPLA-LAGGVIPALQWYAPPLHGGADGLQDWST 252 NRGAYL +G GHCSACHS RN LGA A AGG A W AP L+ + WS Sbjct: 192 NRGAYLAEGLGHCSACHSPRNALGAEKSGSAHFAGG--EAEGWTAPALNASSPAPIAWSE 249 Query: 253 ADIAALLKTGVSP-HAVTLGPMSEIVGRSLQYLNDADVSAMAVYLKSLPASAADDAARPA 311 + A L+ G S H V GPM+ +VG L D D+ A+A YL S A+ A + Sbjct: 250 EALYAYLRHGYSAYHGVASGPMAPVVGEGLAKQPDEDLRALAHYLASYAAAPAGE----- 304 Query: 312 SVEPAEAERIMKQ-----------GKQLYGTLCVDCHGGKGQGSAPDY----PPLAGNRA 356 + +A+R+ +Q G +L+ C+ CH G P + P LA N Sbjct: 305 -TDQQQAQRLDRQGYGRVQPPSGSGARLFAGACLACH---HDGDGPRFFGVRPSLALNSN 360 Query: 357 IAGPHPANAVRAVLNGGFPPSTAGNPYPFGMPPFGPQLSDQEVAAVVSYVRNSWGNQ 413 + P N +R +L+G P+T Y MP F L D++VA + +Y+R + + Sbjct: 361 VHADSPDNLLRIILDGIHSPATGDLGY---MPGFRHSLDDRQVATLANYLRERFAGK 414 >SMb20402 [C] COG2010 Cytochrome c, mono- and diheme variants Sme Sinorhizobium meliloti Length = 462 Score = 226 bits (575), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 156/434 (35%), Positives = 216/434 (49%), Gaps = 55/434 (12%) Query: 27 WQWLGPEERGAATPAPDPTHQLAQGQYLARAGNCMACHTARGGAPYAGGRAIASPFGTLY 86 W+ PE+ AA A +A+G LA GNC+ACHT G +AGG A+ +PFGT+Y Sbjct: 26 WRSEIPEDTTAAE-ARFAAELVAKGAQLAALGNCIACHTVPGRPAFAGGLALPTPFGTIY 84 Query: 87 TSNITPDKTTGIGQWSADDFWRALHHGRGKEGQFLYPAFPYTSYTRLSRADSDALFAYLQ 146 ++NITPD+ TGIG WS F RA+ G +EG LYPAFPY +TR+S D+ AL+A+L Sbjct: 85 STNITPDRETGIGGWSEAAFERAMREGVDREGSHLYPAFPYEHFTRVSADDNRALYAFLM 144 Query: 147 SLPPVARANQTHALRFPYDQRMLLGLWRALYFTPQSYQPDPRQDAQWNRGAYLVQGAGHC 206 + V + L FP R LL W+ L+ +PDP Q WNRG YL +G GHC Sbjct: 145 TRVAVKAEALENDLPFPLKFRPLLAGWKLLFLDSGEREPDPGQSDAWNRGRYLAEGLGHC 204 Query: 207 SACHSARNRLGASIEPLALAGGVIPALQWYAPPLHGGADGLQDWSTADIAALLKTGVSP- 265 ACH+ RN GA GG Q YA ++ + W +A L+ G Sbjct: 205 GACHTPRNPFGAEDRDRHFGGGEAEGWQAYA--INTESKAPIPWDEQSLAFYLRNGWHEF 262 Query: 266 HAVTLGPMSEIVGRSLQYLNDADVSAMAVYLKSL-----------------------PAS 302 H V+ GPM+E+ G +L +L D+D++A+A Y++S+ P Sbjct: 263 HGVSRGPMAEVTG-NLAFLPDSDIAAIATYVRSIMGAPTPEREQRAAQLREAFEGQRPEQ 321 Query: 303 AADDAARPASVEPAEAERIMKQGKQLYGTLCVDCH-GGKGQGSAPDYPPLAG-----NRA 356 AAD P S ++ G+ +Y C CH GG+ Q P G + A Sbjct: 322 AADSQRSPVSASGSQP------GEAIYLAACASCHEGGRRQ-------PFGGLNFELSTA 368 Query: 357 IAGPHPANAVRAVLNGGFPPSTAGNPYPFGMPPFGPQLSDQEVAAVVSYVRNSWGNQ--- 413 + P+P N V VL G PP A MP F L+DQ+VA +++Y+R + + Sbjct: 369 VNAPNPQNIVNVVLF-GLPP--ADGEASAVMPAFRHLLNDQQVADLLAYMRERFSEEPPW 425 Query: 414 GGLVSAAEVNRYRS 427 GLV + R RS Sbjct: 426 AGLVE--QTARTRS 437