BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0048.p         (158 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1522 [K] COG0782 Transcription elongation factor Rso Ralstoni...   228   3e-60
NMA1643 [K] COG0782 Transcription elongation factor NmA Neisseri...   216   2e-56
NMB1430 [K] COG0782 Transcription elongation factor Nme Neisseri...   214   9e-56
PM0715 [K] COG0782 Transcription elongation factor Pmu Pasteurel...   182   3e-46
HI1331 [K] COG0782 Transcription elongation factor Hin Haemophil...   180   1e-45

>RSc1522 [K] COG0782 Transcription elongation factor Rso Ralstonia
           solanacearum
          Length = 158

 Score =  228 bits (582), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/158 (68%), Positives = 136/158 (86%)

Query: 1   MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60
           MST+P+TKRGAE+LK+EL RLKTK+RP V+NAIAEARAQGDLSENA+Y++AKERQ FIEG
Sbjct: 1   MSTIPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60

Query: 61  RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120
           RI ++E KL AAQ++DPA L+A+GR+VF +T+DLE+LDSG+ VTYQIVG DEAD+   K+
Sbjct: 61  RILEIESKLAAAQVIDPAGLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDSGKI 120

Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158
           S++SPIARALIGK  GDV  V AP G +EYE+  V+Y+
Sbjct: 121 SISSPIARALIGKYEGDVATVVAPGGEREYEVRAVKYL 158


>NMA1643 [K] COG0782 Transcription elongation factor NmA Neisseria
           meningitidis Z2491
          Length = 158

 Score =  216 bits (549), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/158 (65%), Positives = 130/158 (82%)

Query: 1   MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60
           M  +PLT RGAELLK+EL +LK+  RPEVI AIAEAR+ GDLSENAEYE+AKERQ FIEG
Sbjct: 1   MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60

Query: 61  RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120
           RI++LE KL  A I++P E++AEG++VF +TV LE+L++ E VTYQIVG DEADIK+ K+
Sbjct: 61  RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120

Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158
            V SPIARALIGK  GD   V+AP G++EY+I+EVRY+
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158


>NMB1430 [K] COG0782 Transcription elongation factor Nme Neisseria
           meningitidis MC58
          Length = 158

 Score =  214 bits (544), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 103/158 (65%), Positives = 129/158 (81%)

Query: 1   MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60
           M  +PLT RGAELLK+EL +LK+  RPEVI AIAEAR+ GDLSENAEYE+AKERQ FIEG
Sbjct: 1   MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60

Query: 61  RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120
           RI++LE KL  A I++P E++AEG++VF +TV LE+L++ E V YQIVG DEADIK+ K+
Sbjct: 61  RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVIYQIVGEDEADIKQGKI 120

Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158
            V SPIARALIGK  GD   V+AP G++EY+I+EVRY+
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158


>PM0715 [K] COG0782 Transcription elongation factor Pmu Pasteurella
           multocida
          Length = 158

 Score =  182 bits (461), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 115/157 (73%)

Query: 1   MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60
           M  +P+T RGAE LK+EL  LK   RPE+INAIAEAR  GDL ENAEY +A+E+Q F EG
Sbjct: 1   MKQIPMTIRGAEQLKQELDFLKNTRRPEIINAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 61  RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120
           RI ++EGKL  +QI+D  ++   G+V+F +T+ L N+D+ E+V+YQIVG DEA+IK   +
Sbjct: 61  RIQEIEGKLANSQIIDVTKIPNNGKVIFGATILLLNIDTEEEVSYQIVGDDEANIKAGLI 120

Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRY 157
           SV SPIAR LIGK   DVV ++ P G  E+EILEV Y
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIQTPGGKVEFEILEVEY 157


>HI1331 [K] COG0782 Transcription elongation factor Hin Haemophilus
           influenzae
          Length = 158

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 115/158 (72%)

Query: 1   MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60
           M  +P+T RGAE L+EEL  LK   RPE+I AIAEAR  GDL ENAEY +A+E+Q F EG
Sbjct: 1   MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 61  RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120
           RI ++EGKLG AQI+D +++   G+V+F +TV L N ++ E+VTY+IVG DEADIK   +
Sbjct: 61  RIQEIEGKLGNAQIIDVSKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120

Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158
           SV SPIAR LIGK   D V +  P G+ E++I+EV Y+
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158