BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0047.p (1051 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1521 [EF] COG0458 Carbamoylphosphate synthase large subunit (... 1491 0.0 PM1505 [EF] COG0458 Carbamoylphosphate synthase large subunit (s... 1372 0.0 NMB1855 [EF] COG0458 Carbamoylphosphate synthase large subunit (... 1371 0.0 NMA0602 [EF] COG0458 Carbamoylphosphate synthase large subunit (... 1368 0.0 PA4756 [EF] COG0458 Carbamoylphosphate synthase large subunit (s... 1335 0.0 >RSc1521 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Rso Ralstonia solanacearum Length = 1081 Score = 1491 bits (3859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 747/953 (78%), Positives = 828/953 (86%), Gaps = 21/953 (2%) Query: 1 MPKRTDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGFKVILVNSNPATIMTDPEM 60 MPKRTDIK+ILIIGAGPIIIGQACEFDYSGAQACKALREEGFKV+LVNSNPATIMTDP Sbjct: 1 MPKRTDIKTILIIGAGPIIIGQACEFDYSGAQACKALREEGFKVVLVNSNPATIMTDPST 60 Query: 61 ADATYIEPITWQAVERIIAKEKPDAILPTMGGQTALNCALDLHRHGVLEKYKVELIGATP 120 AD TYIEPITW+ VERIIAKE+PDAILPTMGGQTALNCALDLHRHGVLEKY VELIGA+P Sbjct: 61 ADVTYIEPITWEVVERIIAKERPDAILPTMGGQTALNCALDLHRHGVLEKYNVELIGASP 120 Query: 121 EAIDKAEDRSKFKQAMTKIGLGSARSGVSHTMEESWAVQKTI-------GFPVIIRPSFT 173 EAIDKAEDR KFK+AMTKIGLGSA+SG++H++EE+ AVQ I G+P++IRPSFT Sbjct: 121 EAIDKAEDRQKFKEAMTKIGLGSAKSGIAHSLEEALAVQAQIARETSSGGYPIVIRPSFT 180 Query: 174 MGGTGGGIAYNAEEFETICKRGLEASPTSELLIEESLIGWKEYEMEVVRDKADNCIIVCS 233 +GGTGGGIAYN EEFE ICKRGL+ SPT+ELLIEESL+GWKEYEMEVVRDK DNCIIVCS Sbjct: 181 LGGTGGGIAYNREEFEDICKRGLDLSPTNELLIEESLLGWKEYEMEVVRDKKDNCIIVCS 240 Query: 234 IENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFSVNPADG 293 IENLDPMG+HTGDSITVAPAQTLTDKEYQI+RNASLAVLREIGVDTGGSNVQFS+NP DG Sbjct: 241 IENLDPMGIHTGDSITVAPAQTLTDKEYQILRNASLAVLREIGVDTGGSNVQFSINPEDG 300 Query: 294 RMIVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELRNEITGGATPASFEPSID 353 RMIVIEMNPRVSRSSALASKATGFPIAK+AAKLAVG+TLDEL+NEITGGATPASFEPSID Sbjct: 301 RMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELKNEITGGATPASFEPSID 360 Query: 354 YVVTKIPRFTFEKFPQADKHLTTQMKSVGEVMAIGRTFQESFQKALRGLEVGVDGMNEKT 413 YVVTK+PRF FEKFPQAD HLTTQMKSVGEVMA+GRTFQESFQKALRGLEVGVDG++EK+ Sbjct: 361 YVVTKVPRFAFEKFPQADSHLTTQMKSVGEVMAMGRTFQESFQKALRGLEVGVDGLDEKS 420 Query: 414 TDRELIEKELGEPGPDRIWYVGDAFAQGFSLEEVHGLTHIDPWFLSQIKEIVDIELWLEK 473 +DR+ I E+GEPGPDRIWY+GDAF G S++EV+ T +DPWFL+QI++IV E L K Sbjct: 421 SDRDEIIAEIGEPGPDRIWYLGDAFRLGLSIDEVYAETAVDPWFLAQIEDIVRTE-ALVK 479 Query: 474 DVALESLDKATLFQLKQKGFSDRRLAKLLKTTDTAVREQRKKLNVRPVFKRVDTCAGEFS 533 L+SL A L LKQKGFSDRRLA L+KTT AVRE+R VRPV+KRVDTCA EF+ Sbjct: 480 ARTLDSLSAAELRLLKQKGFSDRRLATLMKTTAQAVREKRIAEKVRPVYKRVDTCAAEFA 539 Query: 534 TDTAYMYSTYDE---ECESNPTDKKKIMVLGGGPNRIGQGIEFDYCCVHAALAMRDDGYE 590 T+TAY+YSTY+ ECE++PT++KKIMVLGGGPNRIGQGIEFDYCCVHAALA+R+DGYE Sbjct: 540 TNTAYLYSTYEAEHGECEADPTERKKIMVLGGGPNRIGQGIEFDYCCVHAALALREDGYE 599 Query: 591 TIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTPLKLALDLE 650 TIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTPLKLALDLE Sbjct: 600 TIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTPLKLALDLE 659 Query: 651 ANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEADALQLAQEIGYPLVVR 710 ANGVPI+GT+PDMIDAAEDRERFQKLL DLGLRQPPNRTAR E +AL+LA EIGYPLVVR Sbjct: 660 ANGVPIIGTTPDMIDAAEDRERFQKLLHDLGLRQPPNRTARAEDEALKLADEIGYPLVVR 719 Query: 711 PSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCLSDGERTFI 770 PSYVLGGRAMEIVHE RDLERYMREAVKVS+DSPVLLDRFLNDAIE DVDCLSDG+R FI Sbjct: 720 PSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCLSDGKRVFI 779 Query: 771 GGVMEHIEQAGVHSGDSACSLPPYSLSKDTIEELKRQTALMAKGLNVVGLMNVQFAIQQS 830 GGVMEHIEQAGVHSGDSACSLPPYSLS+ T++ELKRQTA MA+ LNV+GLMNVQFAIQQ Sbjct: 780 GGVMEHIEQAGVHSGDSACSLPPYSLSQATVDELKRQTAAMARALNVIGLMNVQFAIQQK 839 Query: 831 EVDGKTVDTVFVLEVNPRASRTVPFVSKATGLQLAKIAARXHGRPVAGQPGHQERSGAAL 890 + D V+VLEVNPRASRTVP+VSKATG+ LAK+AAR + G + + Sbjct: 840 GGE----DIVYVLEVNPRASRTVPYVSKATGISLAKVAARCMAGQSLDEQGIHDEVVPSY 895 Query: 891 LQRQGSRVPVREVPGC----GYHSRPRDEVHRRSHGGGQDLRRSLREVADGRR 939 + + P + PG G R EV G+ L +S ++A G R Sbjct: 896 YSVKEAVFPFNKFPGVDPVLGPEMRSTGEVMGVGRTFGEALFKS--QLAAGSR 946 >PM1505 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Pmu Pasteurella multocida Length = 1068 Score = 1372 bits (3550), Expect = 0.0, Method: Compositional matrix adjust. Identities = 656/870 (75%), Positives = 756/870 (86%), Gaps = 9/870 (1%) Query: 1 MPKRTDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGFKVILVNSNPATIMTDPEM 60 MPKRTDI +ILIIGAGPI+IGQACEFDYSGAQACKALREEG+KV+LVNSNPATIMTDP+M Sbjct: 1 MPKRTDINTILIIGAGPIVIGQACEFDYSGAQACKALREEGYKVVLVNSNPATIMTDPDM 60 Query: 61 ADATYIEPITWQAVERIIAKEKPDAILPTMGGQTALNCALDLHRHGVLEKYKVELIGATP 120 AD TYIEPI W+ VE+II KE+PDAILPTMGGQTALNCALDL ++GVL+KY VELIGA Sbjct: 61 ADVTYIEPIEWRTVEKIIEKERPDAILPTMGGQTALNCALDLSKNGVLKKYNVELIGAKE 120 Query: 121 EAIDKAEDRSKFKQAMTKIGLGSARSGVSHTMEESWAVQKTIGFPVIIRPSFTMGGTGGG 180 +AIDKAEDR +FK+AM KIGL + +S V HT+EE+WA Q +GFP +IRPSFTMGG+GGG Sbjct: 121 DAIDKAEDRGRFKEAMEKIGLSTPKSFVCHTLEEAWAAQSEVGFPTLIRPSFTMGGSGGG 180 Query: 181 IAYNAEEFETICKRGLEASPTSELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPM 240 IAYN +EF IC+RG +ASPT ELLIE+S++GWKEYEMEVVRDKADNCIIVCSIEN DPM Sbjct: 181 IAYNKDEFYAICERGFDASPTHELLIEQSVLGWKEYEMEVVRDKADNCIIVCSIENFDPM 240 Query: 241 GVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFSVNPADGRMIVIEM 300 GVHTGDSITVAPAQTLTDKEYQIMRNAS+AVLREIGVDTGGSNVQF++NP +G MIVIEM Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVDTGGSNVQFAINPENGEMIVIEM 300 Query: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELRNEITGGATPASFEPSIDYVVTKIP 360 NPRVSRSSALASKATGFPIAK+AAKLAVG+TL+ELRN+ITGG PASFEPSIDYVVTK+P Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLNELRNDITGGLIPASFEPSIDYVVTKVP 360 Query: 361 RFTFEKFPQADKHLTTQMKSVGEVMAIGRTFQESFQKALRGLEVGVDGMNEKTTDRELIE 420 RF FEKFPQAD LTTQMKSVGEVMA+GRTFQES QKALRGLE G+ G N + + E I Sbjct: 361 RFAFEKFPQADDRLTTQMKSVGEVMAMGRTFQESLQKALRGLETGICGFNLMSEEPEKIR 420 Query: 421 KELGEPGPDRIWYVGDAFAQGFSLEEVHGLTHIDPWFLSQIKEIVDIELWLEKDVALESL 480 +ELG PGP RI YV DAF GF+L+EVH + IDPWFL QI+++V EL LEK L+ L Sbjct: 421 QELGNPGPIRILYVADAFGAGFTLDEVHHYSKIDPWFLIQIQDLVLEELALEKR-TLDDL 479 Query: 481 DKATLFQLKQKGFSDRRLAKLLKTTDTAVREQRKKLNVRPVFKRVDTCAGEFSTDTAYMY 540 D A L +LK+KGFSD+R+A+L K+ ++AVR +R LN+ PV+KRVDTCAGEF++DTAY+Y Sbjct: 480 DYAELRRLKRKGFSDKRIAQLTKSAESAVRNKRVSLNLHPVYKRVDTCAGEFTSDTAYLY 539 Query: 541 STYDEECESNPTDKKKIMVLGGGPNRIGQGIEFDYCCVHAALAMRDDGYETIMVNCNPET 600 STY+EECES P+DKKKIM+LGGGPNRIGQGIEFDYCCVHA+LA+R+ G+ETIMVNCNPET Sbjct: 540 STYEEECESRPSDKKKIMILGGGPNRIGQGIEFDYCCVHASLALREAGFETIMVNCNPET 599 Query: 601 VSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTPLKLALDLEANGVPIVGTS 660 VSTD+DTSDRLYFEP+TLEDVLEI+ EKP GVIV YGGQTPLKLA DL ANGV I+GTS Sbjct: 600 VSTDFDTSDRLYFEPLTLEDVLEIIHVEKPHGVIVHYGGQTPLKLANDLHANGVNIIGTS 659 Query: 661 PDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEADALQLAQEIGYPLVVRPSYVLGGRAM 720 D IDAAEDRERFQ++L L L+QP NRTAR +A++LA+E+GYPLVVRPSYVLGGRAM Sbjct: 660 ADSIDAAEDRERFQQILHKLHLKQPTNRTARNAEEAVKLAEEVGYPLVVRPSYVLGGRAM 719 Query: 721 EIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCLSDGERTFIGGVMEHIEQA 780 +IV+ +L+RYMREAV VS+DSP+LLD FLN+AIEVDVDC+ DG IGG+M+HIEQA Sbjct: 720 QIVYNVDELQRYMREAVSVSNDSPILLDHFLNNAIEVDVDCICDGAEVVIGGIMQHIEQA 779 Query: 781 GVHSGDSACSLPPYSLSKDTIEELKRQTALMAKGLNVVGLMNVQFAIQQSEVDGKTVDTV 840 G+HSGDSACSLPPYSLS++ +E++RQTA MA L V GLMNVQFA+Q DG + Sbjct: 780 GIHSGDSACSLPPYSLSQEVQDEIRRQTAEMAFALGVKGLMNVQFAVQ----DG----VI 831 Query: 841 FVLEVNPRASRTVPFVSKATGLQLAKIAAR 870 +VLEVNPRASRTVPFVSKATG LAKIAAR Sbjct: 832 YVLEVNPRASRTVPFVSKATGRPLAKIAAR 861 Score = 246 bits (627), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 147/397 (37%), Positives = 221/397 (55%), Gaps = 19/397 (4%) Query: 5 TDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGFKVILVNSNPATIMTDPEMADAT 64 +D K I+I+G GP IGQ EFDY A ALRE GF+ I+VN NP T+ TD + +D Sbjct: 551 SDKKKIMILGGGPNRIGQGIEFDYCCVHASLALREAGFETIMVNCNPETVSTDFDTSDRL 610 Query: 65 YIEPITWQAVERIIAKEKPDAILPTMGGQTALNCALDLHRHGVLEKYKVELIGATPEAID 124 Y EP+T + V II EKP ++ GGQT L A DLH +GV +IG + ++ID Sbjct: 611 YFEPLTLEDVLEIIHVEKPHGVIVHYGGQTPLKLANDLHANGV------NIIGTSADSID 664 Query: 125 KAEDRSKFKQAMTKIGLGSARSGVSHTMEESWAVQKTIGFPVIIRPSFTMGGTGGGIAYN 184 AEDR +F+Q + K+ L + + EE+ + + +G+P+++RPS+ +GG I YN Sbjct: 665 AAEDRERFQQILHKLHLKQPTNRTARNAEEAVKLAEEVGYPLVVRPSYVLGGRAMQIVYN 724 Query: 185 AEEFETICKRGLEASPTSELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHT 244 +E + + + S S +L++ L E +++ + D A+ +I +++++ G+H+ Sbjct: 725 VDELQRYMREAVSVSNDSPILLDHFLNNAIEVDVDCICDGAE-VVIGGIMQHIEQAGIHS 783 Query: 245 GDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFSVNPADGRMIVIEMNPRV 304 GDS P +L+ + +R + + +GV G NVQF+V DG + V+E+NPR Sbjct: 784 GDSACSLPPYSLSQEVQDEIRRQTAEMAFALGVK-GLMNVQFAVQ--DGVIYVLEVNPRA 840 Query: 305 SRSSALASKATGFPIAKIAAKLAVGFTLDELRNEITGGATPASFEPSIDYVVTKIPRFTF 364 SR+ SKATG P+AKIAA++ G +L I G P + K F F Sbjct: 841 SRTVPFVSKATGRPLAKIAARVMAGESLKA--QGIQGEVIPPFYS-------VKEAVFPF 891 Query: 365 EKFPQADKHLTTQMKSVGEVMAIGRTFQESFQKALRG 401 KFP D L +M+S GEVM +G TF E+F KA G Sbjct: 892 IKFPGVDTVLGPEMRSTGEVMGVGTTFAEAFLKAQLG 928 >NMB1855 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Nme Neisseria meningitidis MC58 Length = 1071 Score = 1371 bits (3548), Expect = 0.0, Method: Compositional matrix adjust. Identities = 659/870 (75%), Positives = 749/870 (86%), Gaps = 9/870 (1%) Query: 1 MPKRTDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGFKVILVNSNPATIMTDPEM 60 MPKRTD+KSILIIGAGPI+IGQACEFDYSGAQACKALREEG+KVILVNSNPATIMTDPEM Sbjct: 1 MPKRTDLKSILIIGAGPIVIGQACEFDYSGAQACKALREEGYKVILVNSNPATIMTDPEM 60 Query: 61 ADATYIEPITWQAVERIIAKEKPDAILPTMGGQTALNCALDLHRHGVLEKYKVELIGATP 120 AD TYIEPI WQ VE+IIAKE+PDAILPTMGGQTALNCALDL R+GVL KY VELIGAT Sbjct: 61 ADVTYIEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDLARNGVLAKYNVELIGATE 120 Query: 121 EAIDKAEDRSKFKQAMTKIGLGSARSGVSHTMEESWAVQKTIGFPVIIRPSFTMGGTGGG 180 +AIDKAEDR +FK+AM KIGL +S V HTM E+ A Q+ +GFP +IRPSFTMGG+GGG Sbjct: 121 DAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAAQEQVGFPTLIRPSFTMGGSGGG 180 Query: 181 IAYNAEEFETICKRGLEASPTSELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPM 240 IAYN +EF IC+RG +ASPT ELLIE+S++GWKEYEMEVVRDK DNCII+CSIEN DPM Sbjct: 181 IAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEMEVVRDKNDNCIIICSIENFDPM 240 Query: 241 GVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFSVNPADGRMIVIEM 300 GVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQF+VNPA+G MIVIEM Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFAVNPANGEMIVIEM 300 Query: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELRNEITGGATPASFEPSIDYVVTKIP 360 NPRVSRSSALASKATGFPIAK+AAKLAVGFTLDELRN+ITGG TPASFEPSIDYVVTKIP Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGFTLDELRNDITGGKTPASFEPSIDYVVTKIP 360 Query: 361 RFTFEKFPQADKHLTTQMKSVGEVMAIGRTFQESFQKALRGLEVGVDGMNEKTTDRELIE 420 RF FEKFP AD LTTQMKSVGEVMA+GRT QESFQKALRGLE G+ G N ++ D+ I Sbjct: 361 RFAFEKFPAADDRLTTQMKSVGEVMAMGRTIQESFQKALRGLETGLCGFNPRSEDKAEIR 420 Query: 421 KELGEPGPDRIWYVGDAFAQGFSLEEVHGLTHIDPWFLSQIKEIVDIELWLEKDVALESL 480 +EL PGP+R+ +V DAF GF+LEE+H + IDPWFL+QI++++ E + D L L Sbjct: 421 RELANPGPERMLFVADAFRAGFTLEEIHEICAIDPWFLAQIEDLMKEEKAV-SDGILSDL 479 Query: 481 DKATLFQLKQKGFSDRRLAKLLKTTDTAVREQRKKLNVRPVFKRVDTCAGEFSTDTAYMY 540 D A L +LK+KGFSD+RLA+LL ++ VRE R L + PV+KRVDTCA EF+T+TAY+Y Sbjct: 480 DFAALRRLKRKGFSDKRLAQLLNVSEKEVREHRYALKLHPVYKRVDTCAAEFATETAYLY 539 Query: 541 STYDEECESNPTDKKKIMVLGGGPNRIGQGIEFDYCCVHAALAMRDDGYETIMVNCNPET 600 STY+EECES P+D+KK+M+LGGGPNRIGQGIEFDYCCVHAALA+R+ G+ETIMVNCNPET Sbjct: 540 STYEEECESRPSDRKKVMILGGGPNRIGQGIEFDYCCVHAALALRESGFETIMVNCNPET 599 Query: 601 VSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTPLKLALDLEANGVPIVGTS 660 VSTD+DTSDRLYFEP+TLEDVLEIV E P GVIV YGGQTPLKLA L NGV I+GTS Sbjct: 600 VSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLKLANALVENGVNIIGTS 659 Query: 661 PDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEADALQLAQEIGYPLVVRPSYVLGGRAM 720 D IDAAEDRERFQK+L DLGLRQPPNR A E +AL A+EIGYPLVVRPSYVLGGRAM Sbjct: 660 ADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAM 719 Query: 721 EIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCLSDGERTFIGGVMEHIEQA 780 ++VH +L++YMREAV+VS DSPVLLD FLN+AIEVDVDC+SDG+ IGG+M+H+EQA Sbjct: 720 QVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQA 779 Query: 781 GVHSGDSACSLPPYSLSKDTIEELKRQTALMAKGLNVVGLMNVQFAIQQSEVDGKTVDTV 840 G+HSGDS CSLPPYSLS++ +E++RQT MA L VVGLMNVQFA+Q DG V Sbjct: 780 GIHSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAVQ----DG----VV 831 Query: 841 FVLEVNPRASRTVPFVSKATGLQLAKIAAR 870 FVLEVNPRASRTVPFVSKATG+ LAK+ AR Sbjct: 832 FVLEVNPRASRTVPFVSKATGVPLAKVGAR 861 Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/397 (35%), Positives = 221/397 (55%), Gaps = 19/397 (4%) Query: 5 TDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGFKVILVNSNPATIMTDPEMADAT 64 +D K ++I+G GP IGQ EFDY A ALRE GF+ I+VN NP T+ TD + +D Sbjct: 551 SDRKKVMILGGGPNRIGQGIEFDYCCVHAALALRESGFETIMVNCNPETVSTDFDTSDRL 610 Query: 65 YIEPITWQAVERIIAKEKPDAILPTMGGQTALNCALDLHRHGVLEKYKVELIGATPEAID 124 Y EP+T + V I+ E P ++ GGQT L A L +GV +IG + ++ID Sbjct: 611 YFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLKLANALVENGV------NIIGTSADSID 664 Query: 125 KAEDRSKFKQAMTKIGLGSARSGVSHTMEESWAVQKTIGFPVIIRPSFTMGGTGGGIAYN 184 AEDR +F++ + +GL + ++H EE+ + IG+P+++RPS+ +GG + ++ Sbjct: 665 AAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAMQVVHS 724 Query: 185 AEEFETICKRGLEASPTSELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHT 244 AEE + + ++ S S +L++ L E +++ V D D +I +++++ G+H+ Sbjct: 725 AEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKD-VVIGGIMQHVEQAGIHS 783 Query: 245 GDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFSVNPADGRMIVIEMNPRV 304 GDS P +L+++ +R + A+ +GV G NVQF+V DG + V+E+NPR Sbjct: 784 GDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGV-VGLMNVQFAVQ--DGVVFVLEVNPRA 840 Query: 305 SRSSALASKATGFPIAKIAAKLAVGFTLDELRNEITGGATPASFEPSIDYVVTKIPRFTF 364 SR+ SKATG P+AK+ A+ G +L E E E D+ K F F Sbjct: 841 SRTVPFVSKATGVPLAKVGARCMAGISLKEQGVEK---------EVVPDFYAVKEAVFPF 891 Query: 365 EKFPQADKHLTTQMKSVGEVMAIGRTFQESFQKALRG 401 KFP D L +M+S GEVM +G +F E++ KA G Sbjct: 892 IKFPGVDTILGPEMRSTGEVMGVGASFGEAYYKAQLG 928 >NMA0602 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) NmA Neisseria meningitidis Z2491 Length = 1071 Score = 1368 bits (3542), Expect = 0.0, Method: Compositional matrix adjust. Identities = 658/870 (75%), Positives = 748/870 (85%), Gaps = 9/870 (1%) Query: 1 MPKRTDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGFKVILVNSNPATIMTDPEM 60 MPKRTD+KSILIIGAGPI+IGQACEFDYSGAQACKALREEG+KVILVNSNPATIMTDPEM Sbjct: 1 MPKRTDLKSILIIGAGPIVIGQACEFDYSGAQACKALREEGYKVILVNSNPATIMTDPEM 60 Query: 61 ADATYIEPITWQAVERIIAKEKPDAILPTMGGQTALNCALDLHRHGVLEKYKVELIGATP 120 AD TYIEPI WQ VE+IIAKE+PDAILPTMGGQTALNCALDL R+GVL KY VELIGAT Sbjct: 61 ADVTYIEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDLARNGVLAKYNVELIGATE 120 Query: 121 EAIDKAEDRSKFKQAMTKIGLGSARSGVSHTMEESWAVQKTIGFPVIIRPSFTMGGTGGG 180 +AIDKAEDR +FK+AM KIGL +S V HTM E+ A Q+ +GFP +IRPSFTMGG+GGG Sbjct: 121 DAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAAQEQVGFPTLIRPSFTMGGSGGG 180 Query: 181 IAYNAEEFETICKRGLEASPTSELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPM 240 IAYN +EF IC+RG +ASPT ELLIE+S++GWKEYEMEVVRDK DNCII+CSIEN DPM Sbjct: 181 IAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEMEVVRDKNDNCIIICSIENFDPM 240 Query: 241 GVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFSVNPADGRMIVIEM 300 GVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQF+VNP +G MIVIEM Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEM 300 Query: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELRNEITGGATPASFEPSIDYVVTKIP 360 NPRVSRSSALASKATGFPIAK+AAKLAVGFTLDELRN+ITGG TPASFEPSIDYVVTKIP Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGFTLDELRNDITGGRTPASFEPSIDYVVTKIP 360 Query: 361 RFTFEKFPQADKHLTTQMKSVGEVMAIGRTFQESFQKALRGLEVGVDGMNEKTTDRELIE 420 RF FEKFP AD LTTQMKSVGEVMA+GRT QESFQKALRGLE G+ G N +++D+ I Sbjct: 361 RFAFEKFPAADDRLTTQMKSVGEVMAMGRTIQESFQKALRGLETGLCGFNPRSSDKAEIR 420 Query: 421 KELGEPGPDRIWYVGDAFAQGFSLEEVHGLTHIDPWFLSQIKEIVDIELWLEKDVALESL 480 +EL PGP+R+ +V DAF GF+LEE+H + IDPWFL+QI++++ E + D L L Sbjct: 421 RELANPGPERMLFVADAFRAGFTLEEIHEICAIDPWFLAQIEDLMKEEKAV-SDGVLSDL 479 Query: 481 DKATLFQLKQKGFSDRRLAKLLKTTDTAVREQRKKLNVRPVFKRVDTCAGEFSTDTAYMY 540 D A L +LK+KGFSD+R+A+LL + VRE R LN+ PV+KRVDTCA EF+T+TAY+Y Sbjct: 480 DYAALRRLKRKGFSDKRIAQLLDVKEKEVREHRYVLNLHPVYKRVDTCAAEFATETAYLY 539 Query: 541 STYDEECESNPTDKKKIMVLGGGPNRIGQGIEFDYCCVHAALAMRDDGYETIMVNCNPET 600 STY+EECE+ P+D+KK+M+LGGGPNRIGQGIEFDYCCVHAALA+R+ G+ETIMVNCNPET Sbjct: 540 STYEEECEARPSDRKKVMILGGGPNRIGQGIEFDYCCVHAALALRESGFETIMVNCNPET 599 Query: 601 VSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTPLKLALDLEANGVPIVGTS 660 VSTD+DTSDRLYFEP+TLEDVLEIV E P GVIV YGGQTPLKLA L NGV I+GTS Sbjct: 600 VSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLKLANALVENGVNIIGTS 659 Query: 661 PDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEADALQLAQEIGYPLVVRPSYVLGGRAM 720 D IDAAEDRERFQK+L DLGLRQPPNR A E +AL A+EIGYPLVVRPSYVLGGRAM Sbjct: 660 ADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAM 719 Query: 721 EIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCLSDGERTFIGGVMEHIEQA 780 +IVH L++YMREAV+VS DSPVLLD FLN+AIEVDVDC+SDG+ IGG+M+H+EQA Sbjct: 720 QIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQA 779 Query: 781 GVHSGDSACSLPPYSLSKDTIEELKRQTALMAKGLNVVGLMNVQFAIQQSEVDGKTVDTV 840 G+HSGDS CSLPPYSLS++ +E++RQT MA L VVGLMNVQFA+Q DG V Sbjct: 780 GIHSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAVQ----DG----VV 831 Query: 841 FVLEVNPRASRTVPFVSKATGLQLAKIAAR 870 FVLEVNPRASRTVPFVSKATG+ LAK+ AR Sbjct: 832 FVLEVNPRASRTVPFVSKATGVPLAKVGAR 861 Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/397 (35%), Positives = 221/397 (55%), Gaps = 19/397 (4%) Query: 5 TDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGFKVILVNSNPATIMTDPEMADAT 64 +D K ++I+G GP IGQ EFDY A ALRE GF+ I+VN NP T+ TD + +D Sbjct: 551 SDRKKVMILGGGPNRIGQGIEFDYCCVHAALALRESGFETIMVNCNPETVSTDFDTSDRL 610 Query: 65 YIEPITWQAVERIIAKEKPDAILPTMGGQTALNCALDLHRHGVLEKYKVELIGATPEAID 124 Y EP+T + V I+ E P ++ GGQT L A L +GV +IG + ++ID Sbjct: 611 YFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLKLANALVENGV------NIIGTSADSID 664 Query: 125 KAEDRSKFKQAMTKIGLGSARSGVSHTMEESWAVQKTIGFPVIIRPSFTMGGTGGGIAYN 184 AEDR +F++ + +GL + ++H EE+ + IG+P+++RPS+ +GG I ++ Sbjct: 665 AAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAMQIVHS 724 Query: 185 AEEFETICKRGLEASPTSELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHT 244 AE+ + + ++ S S +L++ L E +++ V D D +I +++++ G+H+ Sbjct: 725 AEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKD-VVIGGIMQHVEQAGIHS 783 Query: 245 GDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFSVNPADGRMIVIEMNPRV 304 GDS P +L+++ +R + A+ +GV G NVQF+V DG + V+E+NPR Sbjct: 784 GDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGV-VGLMNVQFAVQ--DGVVFVLEVNPRA 840 Query: 305 SRSSALASKATGFPIAKIAAKLAVGFTLDELRNEITGGATPASFEPSIDYVVTKIPRFTF 364 SR+ SKATG P+AK+ A+ G +L E E E D+ K F F Sbjct: 841 SRTVPFVSKATGVPLAKVGARCMAGISLKEQGVEK---------EVVPDFYAVKEAVFPF 891 Query: 365 EKFPQADKHLTTQMKSVGEVMAIGRTFQESFQKALRG 401 KFP D L +M+S GEVM +G +F E++ KA G Sbjct: 892 IKFPGVDTILGPEMRSTGEVMGVGASFGEAYYKAQLG 928 >PA4756 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Pae Pseudomonas aeruginosa Length = 1073 Score = 1335 bits (3455), Expect = 0.0, Method: Compositional matrix adjust. Identities = 654/910 (71%), Positives = 748/910 (82%), Gaps = 14/910 (1%) Query: 1 MPKRTDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGFKVILVNSNPATIMTDPEM 60 MPKRTDIKSILI+GAGPI+IGQACEFDYSGAQACKALREEG++VILVNSNPATIMTDP M Sbjct: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPAM 60 Query: 61 ADATYIEPITWQAVERIIAKEKPDAILPTMGGQTALNCALDLHRHGVLEKYKVELIGATP 120 ADATYIEPI W V +II KE+PDA+LPTMGGQTALNCALDL RHGVLEK+ VE+IGA Sbjct: 61 ADATYIEPIKWATVAKIIEKERPDALLPTMGGQTALNCALDLERHGVLEKFGVEMIGANA 120 Query: 121 EAIDKAEDRSKFKQAMTKIGLGSARSGVSHTMEESWAVQKTIGFPVIIRPSFTMGGTGGG 180 + IDKAEDRS+F +AM IGL RSG++H+MEE++ V + +GFP IIRPSFTMGGTGGG Sbjct: 121 DTIDKAEDRSRFDKAMKDIGLACPRSGIAHSMEEAYGVLEQVGFPCIIRPSFTMGGTGGG 180 Query: 181 IAYNAEEFETICKRGLEASPTSELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPM 240 IAYN EEFE IC RGL+ SPT+ELLI+ESLIGWKEYEMEVVRDK DNCIIVCSIEN DPM Sbjct: 181 IAYNREEFEEICARGLDLSPTNELLIDESLIGWKEYEMEVVRDKKDNCIIVCSIENFDPM 240 Query: 241 GVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFSVNPADGRMIVIEM 300 GVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGV+TGGSNVQF + P GRM+VIEM Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVETGGSNVQFGICPNTGRMVVIEM 300 Query: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELRNEITGGATPASFEPSIDYVVTKIP 360 NPRVSRSSALASKATGFPIAKIAAKLAVG+TLDEL+N+ITGG TPASFEP+IDYVVTKIP Sbjct: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELQNDITGGRTPASFEPAIDYVVTKIP 360 Query: 361 RFTFEKFPQADKHLTTQMKSVGEVMAIGRTFQESFQKALRGLEVGVDGMNEK--TTDRE- 417 RF FEKFP+AD LTTQMKSVGEVMAIGRTFQES QKALRGLEVG G + K D E Sbjct: 361 RFAFEKFPKADARLTTQMKSVGEVMAIGRTFQESVQKALRGLEVGATGFDPKLDLNDPEA 420 Query: 418 --LIEKELGEPGPDRIWYVGDAFAQGFSLEEVHGLTHIDPWFLSQIKEIVDIELWLEKDV 475 ++++EL P +R+WYV DAF G S+EEV LT ID WFL QI+++V E + K + Sbjct: 421 DSILKRELTVPSAERVWYVADAFRAGKSVEEVFELTRIDEWFLVQIEDLVKDEEKV-KTL 479 Query: 476 ALESLDKATLFQLKQKGFSDRRLAKLLKTTDTAVREQRKKLNVRPVFKRVDTCAGEFSTD 535 L S+D+ +++LK+KGFSD RLAKLL T+ +R R KL V PV+KRVDTCA EF+TD Sbjct: 480 GLSSIDRELMYKLKRKGFSDARLAKLLGVTEKNLRSHRHKLKVLPVYKRVDTCAAEFATD 539 Query: 536 TAYMYSTYDEECESNPTDKKKIMVLGGGPNRIGQGIEFDYCCVHAALAMRDDGYETIMVN 595 TAYMYSTY+EECE+NP+ ++KIM+LGGGPNRIGQGIEFDYCCVHAALAMR+DGYETIMVN Sbjct: 540 TAYMYSTYEEECEANPSSREKIMILGGGPNRIGQGIEFDYCCVHAALAMREDGYETIMVN 599 Query: 596 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTPLKLALDLEANGVP 655 CNPETVSTDYDTSDRLYFEPVTLEDVLEIV E+P GVIVQYGGQTPLKL LE GVP Sbjct: 600 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQYGGQTPLKLCRALEEAGVP 659 Query: 656 IVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEADALQLAQEIGYPLVVRPSYVL 715 I+GTSPD ID AEDRERFQ+++Q L LRQP N TAR+E +AL ++ IGYPLVVRPSYVL Sbjct: 660 IIGTSPDAIDRAEDRERFQQMVQRLNLRQPANATARSEDEALAASKAIGYPLVVRPSYVL 719 Query: 716 GGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCLSDGERTFIGGVME 775 GGRAMEIV+++ +L+RYMREAV+VS+DSPVLLD FLN AIEVD+D + DGE IG +M+ Sbjct: 720 GGRAMEIVYQEEELKRYMREAVQVSNDSPVLLDHFLNCAIEVDIDAVCDGEIVVIGAIMQ 779 Query: 776 HIEQAGVHSGDSACSLPPYSLSKDTIEELKRQTALMAKGLNVVGLMNVQFAIQQSEVDGK 835 HIEQAGVHSGDSACSLPPYSL + +E++ Q MA L VVGLMNVQ A+Q + Sbjct: 780 HIEQAGVHSGDSACSLPPYSLPQHIQDEIREQVKKMALELGVVGLMNVQMAVQGED---- 835 Query: 836 TVDTVFVLEVNPRASRTVPFVSKATGLQLAKIAARXHGRPVAGQPGHQERSGAALLQRQG 895 +FV+EVNPRASRTVPFVSK G LAK+AAR + G + + Sbjct: 836 ----IFVIEVNPRASRTVPFVSKCVGESLAKVAARVMAGKTLAEVGFTQEIIPPFFSVKE 891 Query: 896 SRVPVREVPG 905 + P + PG Sbjct: 892 AVFPFAKFPG 901 Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 140/394 (35%), Positives = 213/394 (54%), Gaps = 19/394 (4%) Query: 8 KSILIIGAGPIIIGQACEFDYSGAQACKALREEGFKVILVNSNPATIMTDPEMADATYIE 67 + I+I+G GP IGQ EFDY A A+RE+G++ I+VN NP T+ TD + +D Y E Sbjct: 559 EKIMILGGGPNRIGQGIEFDYCCVHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFE 618 Query: 68 PITWQAVERIIAKEKPDAILPTMGGQTALNCALDLHRHGVLEKYKVELIGATPEAIDKAE 127 P+T + V I+ E+P ++ GGQT L L GV +IG +P+AID+AE Sbjct: 619 PVTLEDVLEIVRVEQPKGVIVQYGGQTPLKLCRALEEAGV------PIIGTSPDAIDRAE 672 Query: 128 DRSKFKQAMTKIGLGSARSGVSHTMEESWAVQKTIGFPVIIRPSFTMGGTGGGIAYNAEE 187 DR +F+Q + ++ L + + + +E+ A K IG+P+++RPS+ +GG I Y EE Sbjct: 673 DRERFQQMVQRLNLRQPANATARSEDEALAASKAIGYPLVVRPSYVLGGRAMEIVYQEEE 732 Query: 188 FETICKRGLEASPTSELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDS 247 + + ++ S S +L++ L E +++ V D + +I +++++ GVH+GDS Sbjct: 733 LKRYMREAVQVSNDSPVLLDHFLNCAIEVDIDAVCD-GEIVVIGAIMQHIEQAGVHSGDS 791 Query: 248 ITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFSVNPADGRMIVIEMNPRVSRS 307 P +L +R + E+GV G NVQ +V D + VIE+NPR SR+ Sbjct: 792 ACSLPPYSLPQHIQDEIREQVKKMALELGV-VGLMNVQMAVQGED--IFVIEVNPRASRT 848 Query: 308 SALASKATGFPIAKIAAKLAVGFTLDELRNEITGGATPASFEPSIDYVVTKIPRFTFEKF 367 SK G +AK+AA++ G TL E+ G T P + K F F KF Sbjct: 849 VPFVSKCVGESLAKVAARVMAGKTLAEV------GFTQEIIPP---FFSVKEAVFPFAKF 899 Query: 368 PQADKHLTTQMKSVGEVMAIGRTFQESFQKALRG 401 P D L +MKS GEVM +G +F E+F KA G Sbjct: 900 PGVDPILGPEMKSTGEVMGVGDSFAEAFAKAQLG 933