BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0032.p         (262 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all5308_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                     115   8e-26
all1177_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                     115   1e-25
slr2100 [KT] COG3437 Response regulator containing a CheY-like r...   110   4e-24
alr4879_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                     110   5e-24
AGc4390 [TK] COG0745 Response regulators consisting of a CheY-li...   105   9e-23

>all5308_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 155

 Score =  115 bits (289), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 76/117 (64%)

Query: 19  ILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMPGYDGLTS 78
           +L+VDD  ++  +LS  +   G +  + TDG+    + +   PDLIL+D+ MPG DG  +
Sbjct: 12  VLLVDDNPNNLKVLSEAVQGCGWKALMATDGESALEQTEYAHPDLILLDVMMPGIDGFET 71

Query: 79  CRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVRLRLCIHLR 135
           CR LKAN  T+N PVIF++A +   +KV GL  GAVDYITKPF  EEV  RL +HL+
Sbjct: 72  CRRLKANPITQNTPVIFMTALSDATDKVKGLEIGAVDYITKPFQHEEVIARLKLHLK 128


>all1177_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 171

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 78/117 (66%)

Query: 19  ILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMPGYDGLTS 78
           +L+VDD   +  +LS  +   G  + I TDG+    +A+  +PD+IL+D+ MP  DG  +
Sbjct: 12  VLIVDDNPTNLKVLSDAISSLGWEILIATDGESAIEEAEYAQPDIILLDVMMPEMDGFQT 71

Query: 79  CRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVRLRLCIHLR 135
           C  LK+ TST++IPVIFL+A T   +KV  L TG VDYITKPF+ +EV +R+ +HL+
Sbjct: 72  CAELKSKTSTKDIPVIFLTALTDQFDKVLALVTGGVDYITKPFNLDEVLVRIQVHLK 128


>slr2100 [KT] COG3437 Response regulator containing a CheY-like receiver
           domain and an HD-GYP domain Syn Synechocystis
          Length = 368

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 2/112 (1%)

Query: 10  PPGPLSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRP-DLILMDI 68
           PP P S   ILVVDD  D+  L+SG LL+   R+ I  +G+   + AQT+ P DLIL+DI
Sbjct: 4   PPDPNSKATILVVDDTPDNLALMSG-LLKDYYRVKIANNGEKALKVAQTLPPPDLILLDI 62

Query: 69  RMPGYDGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKP 120
            MPG DG   C  LKAN +T+ IPVIFL+A +  E++  GL+ GAVDYITKP
Sbjct: 63  MMPGIDGYEVCAHLKANPATQRIPVIFLTAKSEIEDERKGLALGAVDYITKP 114


>alr4879_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 120

 Score =  110 bits (274), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 72/112 (64%)

Query: 19  ILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMPGYDGLTS 78
           +L+VDD   +  +L   L + G R+ +  +G     K Q   P+LIL+D+ MPG DG  +
Sbjct: 9   VLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKVQETLPNLILLDVMMPGMDGFET 68

Query: 79  CRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVRLRL 130
           CR LKAN  T++IPVIF++A + T  KV GL  GAVDYITKP ++EEV  R+
Sbjct: 69  CRHLKANPKTKDIPVIFMTALSDTVNKVKGLQIGAVDYITKPIEYEEVLARI 120


>AGc4390 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 309

 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 5/134 (3%)

Query: 19  ILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMPGYDGLTS 78
           +L+VDD+ D    L+  L + G    I T GQ     A+ + PD+IL+D  MP  DG  +
Sbjct: 13  VLLVDDSPDALGFLTDALEQSGFSALIATSGQAALNIAERITPDIILLDAVMPVMDGFET 72

Query: 79  CRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVRLRLCIHLRSAA 138
           CR LKAN +   +PVIF++  T TE  V  L +G VDY+TKP + +E+R R+ +HL    
Sbjct: 73  CRRLKANAAVAQVPVIFMTGLTETEHVVRALESGGVDYLTKPINIDELRARIRVHL---- 128

Query: 139 RSNAPSASTESVEI 152
            SNA SA +  V +
Sbjct: 129 -SNARSAQSARVAL 141