BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0028.p (585 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 389 e-108 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 345 2e-94 RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 342 1e-93 RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 341 2e-93 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 340 5e-93 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust. Identities = 248/533 (46%), Positives = 337/533 (63%), Gaps = 33/533 (6%) Query: 1 MKLADLKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAES 60 M+++D++IG RL F LV A+L+ +A RL N R L A++ Sbjct: 1 MRISDMRIGVRLGAAFALVVALLI---GIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQ 57 Query: 61 LINIETGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQ------RLQEL 114 + N G+ +GI ++L L +TT + +KT+ ++ ++Q RL++L Sbjct: 58 IKN-----NGYKANGILSNL----LLVTTPE---QKTKYMSDYAAIRQANAQAYGRLEKL 105 Query: 115 SDSEQRWLKSAIDPAIELRRAVREGREQMAAVV---------AFEQAGKGKSQMDSMRVL 165 ++Q K+ + R A + A+V A Q + Q D VL Sbjct: 106 LTTDQG--KALFKEQFDARSAYGASVRKFFALVDADNVQEARALYQGDMSRLQ-DRYYVL 162 Query: 166 LDDLDRTESALLGERAEEAAALRSVTSTTLIGGGAIALVLAVLLAWWLANNITRPLALAV 225 +D + ++ + EAAA + +I +A +LA+ ++ ITRP+ A+ Sbjct: 163 VDKMVDHQAGEMEHDVSEAAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAM 222 Query: 226 QLARRVASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIAT 285 LA VA G+LT +EV ++DE G LL ALK M E+L IVS VR GT+ I ASSE+A+ Sbjct: 223 HLAEAVAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVAS 282 Query: 286 GNLDLSSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVAR 345 GN+DLSSRTEQQASSLEETA++ME+LTSTV+QN NA+EA+R+A AS +A+ GG V Sbjct: 283 GNIDLSSRTEQQASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDE 342 Query: 346 VVDTMEEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 405 + TM IN SSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSL Sbjct: 343 AIQTMSTINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSL 402 Query: 406 AQRSAAAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTNMINEISAAGEEQ 465 AQRSAAAAKEIKALI DSV V +G+ V EAG +R++V +Q VTN+++EISA+ EQ Sbjct: 403 AQRSAAAAKEIKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQ 462 Query: 466 RSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEA 518 GIEQ+++A+ QMD+ TQ+NA+LVE++A A+Q+LQ+QA +LA VS F+L A Sbjct: 463 SDGIEQINEAITQMDKATQENASLVEESATAAQALQDQANQLADMVSTFKLHA 515 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 345 bits (885), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 187/300 (62%), Positives = 233/300 (77%) Query: 217 ITRPLALAVQLARRVASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMI 276 + PL + + +A+GDLT IEV R+E G L +LK M LV IV VR G + I Sbjct: 218 LIHPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAI 277 Query: 277 ATASSEIATGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIA 336 + +SEIA GN DLS+RTEQQA+SLEETA+SME+LT+TV+QN NAR+A+++A +AS+ A Sbjct: 278 YSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETA 337 Query: 337 SSGGGVVARVVDTMEEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 396 GG VVA VV TM EI SS+KI DI SVIDGIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 338 QKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFA 397 Query: 397 VVASEVRSLAQRSAAAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTNMIN 456 VVA EVR+LAQRSA AAKEIK LI DSV +V+ GSVLV AG+TM +IV +V RVT+++ Sbjct: 398 VVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMG 457 Query: 457 EISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRL 516 EI++A +EQ GI+Q+ QAV +MD+VTQQNA+LVE++A+A+ SL+EQA L QA+SVF L Sbjct: 458 EIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVL 517 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 342 bits (877), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 212/324 (65%), Positives = 250/324 (77%), Gaps = 3/324 (0%) Query: 222 ALAVQLARRVASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASS 281 A A ++A R+A GDL+ I R D+ +LL A+ M +LV+ + +R +E I TA+ Sbjct: 227 AYAAEVANRIAGGDLSVEIATRP-DDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATR 285 Query: 282 EIATGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGG 341 EIA+GNLDLSSRTEQQASSLEETAS+MEEL STVQQN NA +AN++A +ASD+A GG Sbjct: 286 EIASGNLDLSSRTEQQASSLEETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGD 345 Query: 342 VVARVVDTMEEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 401 VV+RVV+TM IN SSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA E Sbjct: 346 VVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGE 405 Query: 402 VRSLAQRSAAAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTNMINEISAA 461 VRSLAQRSAAAAKEIKALI DSV V++GS LV EAG TMREIV SV+RVT+++ EI+AA Sbjct: 406 VRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAA 465 Query: 462 GEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQA 521 +EQRSGIE+VS AV Q+D TQQNAALVEQAAAA+QSLQEQA L Q V+ FRL+ + Sbjct: 466 SQEQRSGIEEVSHAVTQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPTMS 525 Query: 522 L--EVAPQAAPEAAPATVAAPRSG 543 V +A P AP A +G Sbjct: 526 AVRSVVAKAEPTIAPPVPKAAEAG 549 >RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 600 Score = 341 bits (875), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 215/355 (60%), Positives = 266/355 (74%), Gaps = 2/355 (0%) Query: 166 LDDLDRTESALLGERAEEAAALRSVTSTTLIGGGAIALVL-AVLLAWWLANNITRPLALA 224 +D LDR + A + A E A RS LI G + +L AV A+ L I+ PL+ Sbjct: 163 VDALDRNQ-AEQAKAAYEGAVTRSQNFLWLIIGAIVVGILSAVACAFGLDRAISVPLSRM 221 Query: 225 VQLARRVASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIA 284 + ++ G+LT +I V S+DE GAL L+DM L+R + +R G++ IA+A+ +IA Sbjct: 222 LGSFGEISRGNLTEQIVVTSQDEMGALTRGLQDMQRGLIRTIETMRGGSDSIASATKQIA 281 Query: 285 TGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVA 344 GN+DLS RTE+QASSLEETASSMEELTS V+QN NAR+A+ +A ASDIA GG VV Sbjct: 282 AGNMDLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASTLAVNASDIAVKGGEVVG 341 Query: 345 RVVDTMEEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRS 404 RVV+TM INDSS+KI DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRS Sbjct: 342 RVVETMAGINDSSKKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRS 401 Query: 405 LAQRSAAAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTNMINEISAAGEE 464 LAQRSA AAKEIK LISDSV +VE+G+ LV EAG + E+V +V+RVT+++ EISAA +E Sbjct: 402 LAQRSAGAAKEIKELISDSVGRVENGTTLVAEAGTVIDEVVVAVKRVTDIMGEISAASDE 461 Query: 465 QRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAG 519 Q SGIEQV+QAV QMD+VTQQNAALVE+AAAA+QSL+EQA+ L + V+ FRL G Sbjct: 462 QSSGIEQVNQAVNQMDEVTQQNAALVEEAAAAAQSLEEQARLLRETVASFRLPQG 516 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 340 bits (873), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 205/324 (63%), Positives = 241/324 (74%), Gaps = 8/324 (2%) Query: 195 LIGGGAIALVLAVLLAWWLANNITRPLALAVQLARRVASGDLTARIEVRSRDETGALLGA 254 ++GGG LL W L +IT PL A++ A + GDLT I V DETG +L A Sbjct: 200 IVGGG--------LLTWSLRRSITVPLNRAIEQAEHITRGDLTHAIHVDRADETGRMLLA 251 Query: 255 LKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSLEETASSMEELTST 314 L+ M ESL +V VR G++ IA+A+ +IA GN DLS RTEQQASSLEETASSME+LT Sbjct: 252 LQRMQESLQGMVGQVRTGSDAIASATQQIAAGNADLSQRTEQQASSLEETASSMEQLTGM 311 Query: 315 VQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIVDIISVIDGIAFQT 374 V+QN +AR+A+ +A ASDIA GG VV RVV+TM I+DSSRKI DII VI+GIAFQT Sbjct: 312 VKQNADSARQASTLAVNASDIAVKGGEVVGRVVETMAGIHDSSRKIADIIGVIEGIAFQT 371 Query: 375 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALISDSVAKVESGSVLV 434 NILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK LISDSV +VESG+ LV Sbjct: 372 NILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKTLISDSVGRVESGTTLV 431 Query: 435 NEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAA 494 EAG + E+V +V+RVT ++ EISAA + Q GI QV+QAV QMD+ TQQNAALVEQAA Sbjct: 432 AEAGTVIDEVVVAVKRVTGIMGEISAASDAQSEGIAQVNQAVTQMDEATQQNAALVEQAA 491 Query: 495 AASQSLQEQAQELAQAVSVFRLEA 518 AA+ SLQEQA L V+ FR A Sbjct: 492 AAAMSLQEQADGLRGTVAAFRTRA 515