BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0025.p (274 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 156 5e-38 RSp0840 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 106 5e-23 STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 106 5e-23 CAC0120 [NT] COG0840 Methyl-accepting chemotaxis protein Cac Clo... 86 1e-16 RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 78 2e-14 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 98/274 (35%), Positives = 147/274 (53%) Query: 1 MKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNTG 60 M+I VRLGA FA ++ ++ IA VG++ L + +IV++RY +AL QI + Sbjct: 6 MRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNNGYKA 65 Query: 61 ARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQTRADY 120 L N +L PE++ KY+ ++ +EK + T +G L R+ Y Sbjct: 66 NGILSNLLLVTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQFDARSAY 125 Query: 121 SKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAERASAAS 180 K L+ EA A +QD+Y+ V +MV Q+ M+ A+A Sbjct: 126 GASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDVSEAAAQG 185 Query: 181 SSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDATSKDET 240 ++A M+VL+ +A LL+ ITR+ITRP+N A+ +A AVA G+LT ++ ++DE Sbjct: 186 ANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHLLEVDTQDEI 245 Query: 241 GVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 274 G LL ALK M +NLH IV++VR GTDTI AS E Sbjct: 246 GRLLAALKHMIENLHGIVSQVRGGTDTITRASSE 279 >RSp0840 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 518 Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/272 (33%), Positives = 147/272 (54%) Query: 1 MKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNTG 60 +KI +RLG F ++++ + A + V L S ++I + Y K AL + + Sbjct: 4 LKIGLRLGVAFGFVVLLGLLTAALAVARLNATSGDIEQIASSLYPKTALINTMKINAASM 63 Query: 61 ARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQTRADY 120 A LR+A +A + K L ++ + +++KR+ T G +L L+ T+ Y Sbjct: 64 ASLLRDAWIAPDAAAAKVPLQKLMELRDVSVKLRDDLQKRIRTQSGQDLFKRLQDTQERY 123 Query: 121 SKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAERASAAS 180 R +V+ I+ ++ A L + VQ YF A+ +V++Q+ LM + RA AS Sbjct: 124 GALRARVIAAINAGDKEAARDLLLTEMPAVQSTYFDALDALVAYQTQLMVDTTGRALTAS 183 Query: 181 SSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDATSKDET 240 A ++LV++ A +L+ + ITRSI RPL++A+ +A VA GDL+ +ID+ + DET Sbjct: 184 ERAAILLLVMAAAAAVLAVFAGVWITRSIVRPLDQALHLADNVAQGDLSTRIDSRAADET 243 Query: 241 GVLLGALKSMNDNLHRIVTEVRAGTDTINTAS 272 G L+ AL+SM NL IV EV TDTI TAS Sbjct: 244 GQLVRALESMRANLATIVQEVHESTDTIATAS 275 >STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 521 Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 132/272 (48%) Query: 1 MKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNTG 60 +KI +L F IV+M V + + + +L + I+ + Y + D N Sbjct: 6 IKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNIITNDYPTTVKANLLIDNFNDF 65 Query: 61 ARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQTRADY 120 + + +L + +D + +++ L E+ + +++ +++ R Y Sbjct: 66 IIAQQLMLLDEEGRWSQSSQKELDEISQRITALLDELSSNRHDAASQKIITEIREARQQY 125 Query: 121 SKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAERASAAS 180 + R ++++ I R A + + + VQ Y V+E+++ Q + M + + Sbjct: 126 LESRFRILQDIQSHNRQAAIQEMMTRTVQVQKVYKDKVQELIAVQDAQMHNAGVQVEGDF 185 Query: 181 SSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDATSKDET 240 + +++ L+ +++ + I RSITRPL+EAV+ A A+A GDLT I KDET Sbjct: 186 KTNRTLLITLALISIAAGCVMGWYIVRSITRPLDEAVRFAEAIADGDLTRHITTDYKDET 245 Query: 241 GVLLGALKSMNDNLHRIVTEVRAGTDTINTAS 272 GVLL AL +M L IV EV+ G+++I+TA+ Sbjct: 246 GVLLQALMAMKTRLLDIVQEVQNGSESISTAA 277 >CAC0120 [NT] COG0840 Methyl-accepting chemotaxis protein Cac Clostridium acetobutylicum Length = 555 Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/276 (23%), Positives = 130/276 (47%), Gaps = 4/276 (1%) Query: 1 MKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNTG 60 MKIS ++ F +I + V G+ NL V+++ E V I++ T Sbjct: 7 MKISSKILVGFVVIIFISAVSGVFGILNLNKVNNSNTETYEKMLVPTGELVSISNDFGTM 66 Query: 61 ARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQTRADY 120 +R+ ++ ++ K+ + +S + L + + T G +++ +K + +Y Sbjct: 67 RARVRDVVIETQMDKMDKFSSDFNAASSDFDKVLESFSQTILTADGKTILSEIKDAKKEY 126 Query: 121 SKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAERASAAS 180 + + +EL Q K EA A + ++ DK ++K + + L +S ++ SA + Sbjct: 127 VQYAQQAMELSKQNKNVEAMAIVRNQLTVAHDKLATSIKNVTDMKKELAKESTDQNSATA 186 Query: 181 SSAI--NIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDATSKD 238 ++I I+LV+ G L A+L +RSI P+ + +V+ +A G+L V++ KD Sbjct: 187 KTSIIETIILVILGAG--LGVAMAVLTSRSIGNPMKKITEVSEKIADGELDVELKTDRKD 244 Query: 239 ETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 274 E GVL+ M NL+ +++ + D + S++ Sbjct: 245 EIGVLMNTFNKMVSNLNLVMSSMNTAADQVAIGSKQ 280 >RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 329 Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 82/162 (50%) Query: 112 ALKQTRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDK 171 A+ + A Y +V+L KRDEA + D+ P+ + A + ++ Sbjct: 7 AIDRVEARYGPVATGIVQLALDGKRDEAIQKMDDECRPLLVELIQATTAYARYTRERQEQ 66 Query: 172 SAERASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQ 231 A ++++ LS AVL++ +LITRSITRP+ +AV VA VA GDL + Sbjct: 67 LVAADEAQYGQQRSLLIALSIAAVLVAIGAGVLITRSITRPIGKAVNVAETVARGDLGSR 126 Query: 232 IDATSKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASR 273 IDA DET L AL MN L +IV +VR + +I A+R Sbjct: 127 IDAEGTDETSHRLAALADMNTRLTQIVDKVRDSSGSIAGAAR 168