BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0023.p (498 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 659 0.0 PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 515 e-145 CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibri... 507 e-143 STM0350 [MU] COG1538 Outer membrane protein Sty Salmonella typhi... 434 e-121 RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 426 e-119 >RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 491 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/468 (73%), Positives = 402/468 (85%), Gaps = 2/468 (0%) Query: 26 GCTLMPDYHRPDAPVAAHFAG-ADSKNAADAS-SAPAVADIGWRDVFTDPSLQQVIALAL 83 GCTLMP Y +P APV A FAG +D + D + +A VA+IGWRDVFTDPSLQ+VI LAL Sbjct: 17 GCTLMPTYQQPAAPVPAAFAGASDDRGDTDGTRAATPVAEIGWRDVFTDPSLQRVIDLAL 76 Query: 84 ENNRDLRVAVLNIEKARAQYGVQRAALFPSIKAATSETASRTPGDLSSTGSALTSRSYTA 143 NNRDLRVAVLN+EKARAQY VQ AALFP++KA+ SE+ASRTP LS+TG + S +Y+A Sbjct: 77 ANNRDLRVAVLNLEKARAQYRVQDAALFPTVKASGSESASRTPAALSATGQPVVSHTYSA 136 Query: 144 TLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATAWLTLASDQDRLRL 203 TLGFSAYELDLFGRVRSL QAL+ +L+T EARRS+QISL+AEVATA+LTLA+DQD L+L Sbjct: 137 TLGFSAYELDLFGRVRSLSAQALEQYLATVEARRSSQISLVAEVATAYLTLAADQDLLKL 196 Query: 204 AQDTLESQSSSYALTQRSFELGSSSALTLRQAQTSVESARVDVESYTAQVDQDRNALVLL 263 AQDTL SQS +Y L QRS+ELG++S LTLRQ+QTSV++ARVDVE YTAQV QDRNALVLL Sbjct: 197 AQDTLSSQSDTYRLNQRSYELGTASRLTLRQSQTSVDAARVDVERYTAQVAQDRNALVLL 256 Query: 264 VGKDLPAALLPQGLPDTRLAAASPLATIPPGLPSDLLQRRADIVQAERDLRAANANIGAA 323 VG D+PA LLP+ LPD A+ S LATIPPGL SDLLQRR DI+QAE DL+AANANIGAA Sbjct: 257 VGADVPAELLPRSLPDPSAASGSVLATIPPGLASDLLQRRPDILQAEHDLKAANANIGAA 316 Query: 324 RAAFYPSITLTANAGTASARLAGLFKGGSGSWSFVPQISLPIFDGGANQANLDIATVSRD 383 RAAF+PSI+LTA+AGT+SA LAGLFKGGSG WSF PQISLPIFDGGAN+ANLDIA SRD Sbjct: 317 RAAFFPSISLTASAGTSSASLAGLFKGGSGVWSFGPQISLPIFDGGANRANLDIANASRD 376 Query: 384 ISVAQYEKAIQTAFREVSDALAQRNTLGRQLQAQEALVQASDEAFRLSQARYNSGVDSYL 443 I++AQYEKAIQTAFREVSDALAQR TLGRQL AQ++LV A+ ++++L+ AR+ GVDSYL Sbjct: 377 IALAQYEKAIQTAFREVSDALAQRGTLGRQLDAQQSLVDATSDSYQLATARFKRGVDSYL 436 Query: 444 TVLDSQRTLYSAQKNLIGTQLSRWTNLVTFYKTLGGGWVERTGTPVAS 491 VLDSQR+LY+AQ+NLI T+LSR TNL TFYKTLGGGWVE +G PVA+ Sbjct: 437 NVLDSQRSLYTAQQNLINTRLSRLTNLATFYKTLGGGWVETSGAPVAA 484 >PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 485 Score = 515 bits (1326), Expect = e-145, Method: Compositional matrix adjust. Identities = 268/462 (58%), Positives = 344/462 (74%), Gaps = 7/462 (1%) Query: 21 AMLLGGCTLMPDYHRPDAPVAAHFAGADSKNAADASSAPAVADIGWRDVFTDPSLQQVIA 80 A++L GC+L+PDY RP+APVAA + + ++A ADIGWR+ F DP LQQ+I Sbjct: 12 AVVLSGCSLIPDYQRPEAPVAAAYPQGQAYGQNTGAAAVPAADIGWREFFRDPQLQQLIG 71 Query: 81 LALENNRDLRVAVLNIEKARAQYGVQRAALFPSIKAATSETASRTPGDLSSTGSALTSRS 140 +ALENNRDLRVA LN+E RAQY +QRA LFP I S T R PGDLS+TGS S Sbjct: 72 VALENNRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQ 131 Query: 141 YTATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATAWLTLASDQDR 200 Y TLG +A+ELDLFGR+RSL++QAL+ +L+T +A+RS Q +L+A VATA+LTL +DQ + Sbjct: 132 YGVTLGTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQ 191 Query: 201 LRLAQDTLESQSSSYALTQRSFELGSSSALTLRQAQTSVESARVDVESYTAQVDQDRNAL 260 L+L +DTL + S+ LTQRS+++G +SAL LRQAQT+VE AR + YT V QD+NAL Sbjct: 192 LQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNAL 251 Query: 261 VLLVGKDLPAALLPQGLP-DTRLAAASPLATIPPGLPSDLLQRRADIVQAERDLRAANAN 319 VLL+G +PA LPQGL D L L +P GLPSDLLQRR DI++AE L AANA+ Sbjct: 252 VLLLGSGIPAN-LPQGLGLDQTL-----LTEVPAGLPSDLLQRRPDILEAEHQLMAANAS 305 Query: 320 IGAARAAFYPSITLTANAGTASARLAGLFKGGSGSWSFVPQISLPIFDGGANQANLDIAT 379 IGAARAAF+PSI+LTANAGT S +L+GLF GSGSW F P I+LPIF G+ +A+LD A Sbjct: 306 IGAARAAFFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRASLDYAK 365 Query: 380 VSRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLQAQEALVQASDEAFRLSQARYNSGV 439 + +DI+VAQYEKAIQTAF+EV+D LA R T QLQAQ LV+ASDE ++L+ RY +GV Sbjct: 366 IQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGV 425 Query: 440 DSYLTVLDSQRTLYSAQKNLIGTQLSRWTNLVTFYKTLGGGW 481 D+YLT+LD+QR+L++AQ+ LI +L++ T+ V YK LGGGW Sbjct: 426 DNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGW 467 >CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibrioides Length = 467 Score = 507 bits (1305), Expect = e-143, Method: Compositional matrix adjust. Identities = 269/457 (58%), Positives = 333/457 (72%), Gaps = 8/457 (1%) Query: 24 LGGCTLMPDYHRPDAPVAAHFAGADSKNAADASSAPAVADIGWRDVFTDPSLQQVIALAL 83 +G CTL P Y RP PVA + S A +A++ + AD+ WR V DP LQ V+ LAL Sbjct: 15 VGACTLAPQYERPVLPVAQTW----STPAPEAATTVSAADLDWRQVLVDPRLQGVVDLAL 70 Query: 84 ENNRDLRVAVLNIEKARAQYGVQRAALFPSIKAATSETASRTPGDLSSTGSALTSRSYTA 143 + NRDLRVAVLNIEKARAQYGVQR+ALFP + A SE RTP S TG + + A Sbjct: 71 QQNRDLRVAVLNIEKARAQYGVQRSALFPGVSGAVSEQRGRTPASTSPTGQPFETDVFNA 130 Query: 144 TLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATAWLTLASDQDRLRL 203 T+GF+AYELDLFGRVRSLK+ ALQS+L+T + RS ++SLIAE+A AWLTLA+DQ+RL L Sbjct: 131 TIGFTAYELDLFGRVRSLKDAALQSYLATEQTSRSVRVSLIAEIANAWLTLAADQERLAL 190 Query: 204 AQDTLESQSSSYALTQRSFELGSSSALTLRQAQTSVESARVDVESYTAQVDQDRNALVLL 263 A+ TL ++ S L ++ + G+ S L LR A+T E+AR DV YTAQV QDRNAL LL Sbjct: 191 AKTTLATREDSLRLVRQRVDGGAGSLLDLRNAETLAETARADVAVYTAQVAQDRNALTLL 250 Query: 264 VGKDLPAALLPQGLPDTRLAAASPLATIPPGLPSDLLQRRADIVQAERDLRAANANIGAA 323 G DLP LLP G RL A S LA +P GLPSD+L RR D++ AER L+AANANIGAA Sbjct: 251 AGGDLPVDLLPPG----RLDADSVLADLPAGLPSDVLARRPDVLAAERQLQAANANIGAA 306 Query: 324 RAAFYPSITLTANAGTASARLAGLFKGGSGSWSFVPQISLPIFDGGANQANLDIATVSRD 383 RAAF+P I+LT +AG+AS L GLFK G+ WSF PQISLPIF GGAN ANL+I+ RD Sbjct: 307 RAAFFPRISLTGSAGSASTDLDGLFKSGTSIWSFTPQISLPIFAGGANVANLNISKADRD 366 Query: 384 ISVAQYEKAIQTAFREVSDALAQRNTLGRQLQAQEALVQASDEAFRLSQARYNSGVDSYL 443 I+VA YEK +QTAFREVSDAL+ R T+ +L AQE L A+ ++ RLSQ R ++G+DS L Sbjct: 367 IAVATYEKTVQTAFREVSDALSVRATVADRLTAQERLTAAAADSTRLSQQRRDAGLDSAL 426 Query: 444 TVLDSQRTLYSAQKNLIGTQLSRWTNLVTFYKTLGGG 480 T+LD+QR+LY+AQ+ LI +L++ TNLVT YKTLGGG Sbjct: 427 TLLDAQRSLYTAQQGLISARLAQATNLVTLYKTLGGG 463 >STM0350 [MU] COG1538 Outer membrane protein Sty Salmonella typhimurium LT2 Length = 503 Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/460 (50%), Positives = 314/460 (68%), Gaps = 4/460 (0%) Query: 24 LGGCTLMPDYHRPDAPVAAHFAGADSKNAADASSAPAVADIGWRDVFTDPSLQQVIALAL 83 L GCT+ P + RP +P A + A S S AP ADIGWRD F DP LQ++IA+AL Sbjct: 41 LAGCTMAPKHERPASPTAMVYPYATST----VSGAPDAADIGWRDFFHDPLLQELIAIAL 96 Query: 84 ENNRDLRVAVLNIEKARAQYGVQRAALFPSIKAATSETASRTPGDLSSTGSALTSRSYTA 143 NNRDLR A LN+E ARA Y +QRA + P++ AT+ ASRTP DLS + +R Y A Sbjct: 97 RNNRDLRKAGLNVEAARALYRIQRAEMLPTLGIATAMDASRTPADLSVMDESEINRRYEA 156 Query: 144 TLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATAWLTLASDQDRLRL 203 +A+ELDL+GRVRSL +QAL ++++ E + ++SL++EVA+AWLTL +D++ LRL Sbjct: 157 AGATTAWELDLWGRVRSLSDQALAAYMALDETYIAARMSLVSEVASAWLTLRADRELLRL 216 Query: 204 AQDTLESQSSSYALTQRSFELGSSSALTLRQAQTSVESARVDVESYTAQVDQDRNALVLL 263 +DTL +Q SSY LT + G+++ L LR A+ ++ SA ++ +YT Q+ +DRNAL LL Sbjct: 217 TEDTLAAQKSSYTLTTQLARTGNATQLDLRMAEIALRSAEINRAAYTRQLARDRNALELL 276 Query: 264 VGKDLPAALLPQGLPDTRLAAASPLATIPPGLPSDLLQRRADIVQAERDLRAANANIGAA 323 +G+ L L + L + T+P GLPSDLL RR DI AE LR ANA IGAA Sbjct: 277 LGQPLTPELSRRLNEAVTLTEGAIPTTLPGGLPSDLLVRRPDIRAAEYRLRGANARIGAA 336 Query: 324 RAAFYPSITLTANAGTASARLAGLFKGGSGSWSFVPQISLPIFDGGANQANLDIATVSRD 383 RAAF+P+I+LT +AGTASA L+GLF+ GSGSW F+PQI+LP+F GGA +A+LD A V + Sbjct: 337 RAAFFPTISLTGSAGTASASLSGLFEPGSGSWRFLPQITLPLFHGGALRADLDRAHVQKQ 396 Query: 384 ISVAQYEKAIQTAFREVSDALAQRNTLGRQLQAQEALVQASDEAFRLSQARYNSGVDSYL 443 I +A+YE IQ AFR+V+D LA + TL Q+Q+++ V+AS A+ L+ R+ GVD YL Sbjct: 397 IEIARYENVIQQAFRDVADGLAGQRTLNDQVQSEQRAVEASQIAYELAGLRFQEGVDDYL 456 Query: 444 TVLDSQRTLYSAQKNLIGTQLSRWTNLVTFYKTLGGGWVE 483 T+LD+ R LY AQ+ L+ T+L + N++ YK LGGGW E Sbjct: 457 TLLDTHRMLYGAQQRLVRTRLMQQLNIINLYKALGGGWRE 496 >RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 514 Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust. Identities = 236/471 (50%), Positives = 307/471 (65%), Gaps = 11/471 (2%) Query: 23 LLGGCTLMPDYHRPDAPVAAHFA------GADSKNAADASSAPAVADIGWRDVFTDPSLQ 76 +L GC+L P Y R APVA + G + A +AP D+GWR+ F DP LQ Sbjct: 22 VLSGCSLAPRYERLAAPVAGDYPQAPAGYGVSADTAKPGETAPRATDLGWREFFPDPRLQ 81 Query: 77 QVIALALENNRDLRVAVLNIEKARAQYGVQRAALFPSIKAATSETASRTPGDLSSTGSAL 136 ++I L+LENNRDLRVA+LNIE ARAQY Q A L P I A + T S TP +S TG + Sbjct: 82 RLIGLSLENNRDLRVAILNIEAARAQYRQQIADLLPPINATATYTRSLTPQSISQTGQDI 141 Query: 137 TSRSYTATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATAWLTLAS 196 ++ Y +G S Y+++LF V + A S+L+T E +R+TQISLI++VA A+L + Sbjct: 142 NTKQYQLGVGISNYQVNLFS-VGDVTSSARASYLATEEGQRATQISLISQVAKAYLNERA 200 Query: 197 DQDRLRLAQDTLESQSSSYALTQRSFELGSSSALTLRQAQTSVESARVDVESYTAQVDQD 256 ++L LAQ TL+ + Y L ++ F++G+SSAL LRQ +T VESARV V T Q Q Sbjct: 201 YAEQLELAQQTLKGREDYYKLAKQRFDVGASSALDLRQNETLVESARVSVAQLTRQYAQA 260 Query: 257 RNALVLLVGKDLPAALLPQGLPDTRLAAASPLATIPPGLPSDLLQRRADIVQAERDLRAA 316 NALVLLVG LPA L P T +++ +A IPPGLPS+LL++R DI QAE+ L AA Sbjct: 261 TNALVLLVGSPLPADLPP----PTTVSSEKIVADIPPGLPSELLEQRPDIRQAEQKLVAA 316 Query: 317 NANIGAARAAFYPSITLTANAGTASARLAGLFKGGSGSWSFVPQISLPIFDGGANQANLD 376 NANIG ARAAF+PS+ LT+N GTAS L LFK G+G WSFVP ++LPIF+ G N NLD Sbjct: 317 NANIGVARAAFFPSLGLTSNVGTASTALHDLFKSGTGLWSFVPNLTLPIFNWGTNVFNLD 376 Query: 377 IATVSRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLQAQEALVQASDEAFRLSQARYN 436 + ++ I+VA YEK IQTAF+EVSDAL R TL Q+ AQ+ A+ E LS RY Sbjct: 377 LTKANQKIAVANYEKTIQTAFQEVSDALVARGTLDEQVAAQKRFRDATAERLTLSDQRYR 436 Query: 437 SGVDSYLTVLDSQRTLYSAQKNLIGTQLSRWTNLVTFYKTLGGGWVERTGT 487 +GV S+L VLD+QR L+SA + L+ T+L+R TN V Y LGGG E + T Sbjct: 437 NGVSSFLDVLDAQRDLFSADQTLVQTRLARLTNAVDLYTALGGGLQEHSTT 487