BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0008.p (309 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0221 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 215 1e-55 PA2551 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 210 3e-54 RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 206 5e-53 RSp0692 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 201 1e-51 RSc2243 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 196 4e-50 >RSp0221 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 304 Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/301 (42%), Positives = 180/301 (59%), Gaps = 8/301 (2%) Query: 5 NNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFEDPLFIRTKEGMQPT 64 +DLNLL VFQAI R++TLA +++QPA+S AL RLR++F DPLF+ GM+PT Sbjct: 4 KRLDLNLLGVFQAIYQTRNVTLAARHHNITQPAMSNALARLREVFADPLFVPGPYGMRPT 63 Query: 65 PAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQA 124 P A +LA PI RAL+ V+ AL ++ FDPA S R FR +TD A++ FLP L E L AQA Sbjct: 64 PYAQQLAAPIERALREVEQALAMSKGFDPASSDREFRMHLTDFAQVAFLPALLERLRAQA 123 Query: 125 PDVRLQVEQVPPAHLEEALRTGQLDFAFGNL-PALKPVTCHELLFRETYVCLMRQRDGLP 183 P V ++VE + + AL G+LDFAFG + A LF++ Y LMR L Sbjct: 124 PRVAIRVEALAEEAIRPALDEGRLDFAFGRMSKAAGHGVGRHALFKDRYAVLMRAGHPLA 183 Query: 184 QRAQLGLDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGKSDL 243 +A L +F+A VLV S H VE+ K+G RI+L +P F V+ RI+ SDL Sbjct: 184 GQA-LSRKDFVASEQVLV--CTSGHQAVEDMLVKMGA--RIALRLPSFLVVSRIVETSDL 238 Query: 244 VATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIVIDLLQ 303 + +PAR+A + + G+F LPV +P +V+L W +S D ++W+R+++ L Sbjct: 239 MVIIPARLAEQYAAT--GLFRMAALPVAMPAFDVSLFWSESRSADPAHAWMRELLQQLFG 296 Query: 304 Q 304 Q Sbjct: 297 Q 297 >PA2551 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 310 Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 175/303 (57%), Gaps = 7/303 (2%) Query: 3 TFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFEDPLFIRTKEGMQ 62 N +DLNL VF AI E +LT AG + ++QPAVS AL RLR+ F DPLF+RT +GM Sbjct: 2 NLNKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALSRLRETFNDPLFVRTAQGMV 61 Query: 63 PTPAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTA 122 PTP A + P+ ALQ ++ +++ + FDP Q+ + +R SMTD+ E + LP L + L Sbjct: 62 PTPMAQNIIGPVRNALQLLRVSVQESRSFDPQQANKTYRISMTDLTEAVILPPLFQRLRR 121 Query: 123 QAPDVRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRDGL 182 AP+V ++ + L G+LDFA P H L + YVC MR+ L Sbjct: 122 LAPNVHIESFLAKRRETTKELAAGRLDFAVDAPLNTDPQVRHVKLMEDRYVCAMRRGHPL 181 Query: 183 PQRAQLGLDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGKSD 242 + +L LD++L ++H+ + S S ++ + K+G+QR+I+L H+ + ++ ++D Sbjct: 182 AGKPKLALDDYLGLTHIHISSRRSGLGYIDLALGKMGIQRKIALRSQHYLMASTVVQQTD 241 Query: 243 LVATVPARIARLFHSEHPGVFVSYQLPV-NIPVVEVTLHWHQSFDHDAGNSWLRQIVIDL 301 + TVP R AR H H V LPV ++P +E L+WH+S D D N W+R+ +I+L Sbjct: 242 MAMTVPERFAR-HHDLHYAV-----LPVSDVPKLETHLYWHESTDQDPANRWMREQIIEL 295 Query: 302 LQQ 304 QQ Sbjct: 296 CQQ 298 >RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 300 Score = 206 bits (524), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 113/295 (38%), Positives = 166/295 (56%), Gaps = 3/295 (1%) Query: 6 NMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFEDPLFIRTKEGMQPTP 65 ++DLNLL VF + +R ++ L ++QPA+S AL RLR++ D LF+RT +GM PTP Sbjct: 5 DIDLNLLVVFNELLRQRRVSAVAETLGITQPAISNALNRLRKLLGDELFVRTSKGMIPTP 64 Query: 66 AALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQAP 125 A LA+PI AL A+ ++L T RF+PA STR F +MTD+ E+ FLP L L AP Sbjct: 65 FAETLAEPIAYALGAIYNSLNATSRFEPATSTRAFTIAMTDIGEIYFLPTLMRRLARDAP 124 Query: 126 DVRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRDGLPQR 185 V + + L + + G++D A G LP LK LFR+ YVCL R+ L +R Sbjct: 125 GVTVSTVRNHADTLRDEMEAGRVDLAIGFLPDLKSGFFQRRLFRQRYVCLFRKGHPLAKR 184 Query: 186 AQLGLDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGKSDLVA 245 + ++ FL HV + + + H V+ + + G+ RR+SL +PHF L IL +DL+A Sbjct: 185 G-MTMEGFLEAEHVSIVAEGTGHGMVDATILRAGLPRRVSLHVPHFIALGHILQSTDLIA 243 Query: 246 TVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIVID 300 VP A + P + PV IP + + + WH + GN WLRQ++ + Sbjct: 244 VVPQAYAT--RTLKPFGLDTAACPVKIPDITINVLWHARNHREPGNQWLRQLLFE 296 >RSp0692 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 321 Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 114/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%) Query: 1 MATFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFEDPLFIRTKEG 60 M ++DLNLL VFQ I E+ + RL LSQPAVS AL RLRQ F+D LF+RT G Sbjct: 13 MLNLRDVDLNLLVVFQEILREKRIAAVAQRLGLSQPAVSNALARLRQTFDDELFVRTPRG 72 Query: 61 MQPTPAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEIL 120 M PT A +LA+P+ AL +Q A F+ A STR F +M+DV E+ F+P L ++ Sbjct: 73 MMPTARAEQLAEPVAMALDMLQRAFGQRTHFEAATSTRTFTIAMSDVGEVYFMPVLAQLC 132 Query: 121 TAQAPDVRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHE-LLFRETYVCLMRQR 179 T QAP VR+ + ++ + +G +D A G L + + LF++ YV + R+ Sbjct: 133 TEQAPGVRIDTLRAGAFDMKVGMESGAIDLAIGAFDDLSGESVFQRRLFQQDYVTMFRRG 192 Query: 180 DGLPQRAQLG---LDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPR 236 L AQ G L+ F A SH++V S+ S ++ + K G+ + S+PHF +P Sbjct: 193 HPLEPAAQAGRLTLERFRAASHLVVASSASPYNAIGPLLDKAGISQSARFSVPHFVAVPY 252 Query: 237 ILGKSDLVATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQ 296 I+ +DLV TVP ++A + P P+ +P ++ + WH+ F DAGN WLR Sbjct: 253 IVSTTDLVVTVPRKLAE--RAAPPFRLQFVPPPLKLPALQTNVFWHRRFHQDAGNQWLRN 310 Query: 297 IV 298 +V Sbjct: 311 LV 312 >RSc2243 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 326 Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 108/289 (37%), Positives = 159/289 (55%), Gaps = 10/289 (3%) Query: 20 DERSLTLAGNRLHLSQPAVSYALGRLRQIFEDPLFIRTKEGMQPTPAALELAKPINRALQ 79 D RS+++A +L +SQP VS AL +LR F DPLF+RT GM+PTP AL L L Sbjct: 21 DARSVSMAAQQLGMSQPGVSTALAKLRTAFGDPLFVRTSRGMEPTPRALALIPAARDVLA 80 Query: 80 AVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQAPDVRLQVEQVPPAHL 139 +Q + T FDPA +T +F +++DV EM+FLP + E + QAP +Q +PPA + Sbjct: 81 RIQQGIVETGAFDPATTTHLFSIALSDVGEMVFLPRIVEAMARQAPHASVQSVTLPPAQI 140 Query: 140 EEALRTGQLDFAFGNLPALKPVT-CHELLFRETYVCLMR-----QRDGLPQRAQLGLDEF 193 E AL TG LD A G P LK + LF + C++R R G +L + +F Sbjct: 141 ERALETGALDLAVGYFPDLKKNNFFQQRLFTHYFTCIVRADHPVTRGG---NTRLSMQQF 197 Query: 194 LAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGKSDLVATVPARIAR 253 L H +V + S E ++ ++R+ +L PHF +P IL ++DL+ATVP + Sbjct: 198 LEYGHAVVRAEGRSQELYERFLERKRIRRKPALLTPHFMSIPFILARTDLIATVPHAVGL 257 Query: 254 LFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIVIDLL 302 F H + V + P+ +P ++ HWH+ F +DA + WLR +V L Sbjct: 258 SFMQSHANIRV-MEPPLALPSFDLKQHWHRKFHNDARSQWLRALVSSLF 305