BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0091.p (270 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3016 [J] COG0090 Ribosomal protein L2 Rso Ralstonia solanacearum 443 e-124 NMB0145 [J] COG0090 Ribosomal protein L2 Nme Neisseria meningiti... 431 e-121 PA4260 [J] COG0090 Ribosomal protein L2 Pae Pseudomonas aeruginosa 431 e-121 NMA0126 [J] COG0090 Ribosomal protein L2 NmA Neisseria meningiti... 428 e-120 YPO0213 [J] COG0090 Ribosomal protein L2 Ype Yersinia pestis 407 e-113 >RSc3016 [J] COG0090 Ribosomal protein L2 Rso Ralstonia solanacearum Length = 276 Score = 443 bits (1140), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/270 (80%), Positives = 242/270 (89%), Gaps = 1/270 (0%) Query: 2 KPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQHYRVVD 61 KPTSPGRR MVKVVNPDL+KG P A L+EK+ + +GRNNNGHITTRH GGGHK HYR+VD Sbjct: 7 KPTSPGRRSMVKVVNPDLHKGAPHAPLLEKQFQKSGRNNNGHITTRHKGGGHKHHYRIVD 66 Query: 62 FRRN-KDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGSEAPIK 120 F+RN KDGIPAK+ER+EYDPNR+A+IAL+ +ADGER+YIIAPKG VG + +G EAPIK Sbjct: 67 FKRNDKDGIPAKIERLEYDPNRSANIALVLFADGERRYIIAPKGAVVGQAVANGPEAPIK 126 Query: 121 SGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGEVRRVH 180 +GN LPIRNIPVGTTIHCVE+LPGKGAQIAR+AG + VL+AREG YAQVRLRSGEVRRVH Sbjct: 127 AGNNLPIRNIPVGTTIHCVEILPGKGAQIARSAGTSAVLLAREGIYAQVRLRSGEVRRVH 186 Query: 181 IECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTAAGRHP 240 IECRATIGEVGN EH+LR+IGKAGATRWRG+RPTVRGV MNPVDHPHGGGEGKTAAGR P Sbjct: 187 IECRATIGEVGNEEHSLRQIGKAGATRWRGIRPTVRGVAMNPVDHPHGGGEGKTAAGRDP 246 Query: 241 VSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 270 VSPWG TKG +TRSNKRTTSMIV RR K+ Sbjct: 247 VSPWGTPTKGYRTRSNKRTTSMIVQRRHKR 276 >NMB0145 [J] COG0090 Ribosomal protein L2 Nme Neisseria meningitidis MC58 Length = 277 Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/267 (77%), Positives = 234/267 (87%) Query: 1 VKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQHYRVV 60 +KPTS GRRGMV+VV LYKG P A L+EKK+ TAGRNNNGHITTRH GGGHK HYRVV Sbjct: 6 MKPTSAGRRGMVRVVTEGLYKGAPYAPLLEKKNSTAGRNNNGHITTRHKGGGHKHHYRVV 65 Query: 61 DFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGSEAPIK 120 DF+RNKDGIPAKVERIEYDPNRTA IALLCYADGER+YIIAP+G+ G L+SG+EA IK Sbjct: 66 DFKRNKDGIPAKVERIEYDPNRTAFIALLCYADGERRYIIAPRGIQAGAVLVSGAEAAIK 125 Query: 121 SGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGEVRRVH 180 GNTLPIRNIPVGTTIHC+EM PGKGAQIAR+AGA+ VL+A+EG YAQVRLRSGEVR+++ Sbjct: 126 VGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLAKEGAYAQVRLRSGEVRKIN 185 Query: 181 IECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTAAGRHP 240 ++CRATIGEVGN E +L+KIGKAGA RWRG+RPTVRGVVMNPVDHPHGGGEG+T R P Sbjct: 186 VDCRATIGEVGNEEQSLKKIGKAGANRWRGIRPTVRGVVMNPVDHPHGGGEGRTGEAREP 245 Query: 241 VSPWGQQTKGKKTRSNKRTTSMIVSRR 267 VSPWG KG +TR+NKRT +MIV RR Sbjct: 246 VSPWGTPAKGYRTRNNKRTDNMIVRRR 272 >PA4260 [J] COG0090 Ribosomal protein L2 Pae Pseudomonas aeruginosa Length = 273 Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/266 (78%), Positives = 237/266 (89%) Query: 2 KPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQHYRVVD 61 KPTS GRR +VKVVN +L+KG P A L+EKKSK+ GRNNNG ITTRHIGGGHKQHYR+VD Sbjct: 7 KPTSAGRRFVVKVVNQELHKGAPYAPLLEKKSKSGGRNNNGRITTRHIGGGHKQHYRLVD 66 Query: 62 FRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGSEAPIKS 121 FRRNKDGIPA VER+EYDPNRTAHIALL YADGER+YIIAPKGV+ GDQLISG APIK+ Sbjct: 67 FRRNKDGIPAIVERVEYDPNRTAHIALLKYADGERRYIIAPKGVAAGDQLISGIGAPIKA 126 Query: 122 GNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGEVRRVHI 181 GN++P+RNIPVG+T+H +E+ PGKGAQIAR+AGA+ L+AREG Y +RLRSGE+R+V Sbjct: 127 GNSMPLRNIPVGSTVHGIELKPGKGAQIARSAGASAQLVAREGAYVTLRLRSGEMRKVLA 186 Query: 182 ECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTAAGRHPV 241 ECRAT+GEV N EH+LR +GKAGATRWRGVRPTVRGV MNPVDHPHGGGEG+T+AGRHPV Sbjct: 187 ECRATLGEVSNSEHSLRSLGKAGATRWRGVRPTVRGVAMNPVDHPHGGGEGRTSAGRHPV 246 Query: 242 SPWGQQTKGKKTRSNKRTTSMIVSRR 267 SPWG QTKGKKTRSNKRT +MIV RR Sbjct: 247 SPWGLQTKGKKTRSNKRTDNMIVRRR 272 >NMA0126 [J] COG0090 Ribosomal protein L2 NmA Neisseria meningitidis Z2491 Length = 277 Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/267 (77%), Positives = 233/267 (87%) Query: 1 VKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQHYRVV 60 +KPTS GRRGMV+VV L+KG P A L+EKK+ TAGRNNNGHITTRH GGGHK HYRVV Sbjct: 6 MKPTSAGRRGMVRVVTEGLHKGAPYAPLLEKKNSTAGRNNNGHITTRHKGGGHKHHYRVV 65 Query: 61 DFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGSEAPIK 120 DF+RNKDGIPAKVERIEYDPNRTA IALLCYADGER+YIIAP+G+ G L+SG+EA IK Sbjct: 66 DFKRNKDGIPAKVERIEYDPNRTAFIALLCYADGERRYIIAPRGIQAGAVLVSGAEAAIK 125 Query: 121 SGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGEVRRVH 180 GNTLPIRNIPVGTTIHC+EM PGKGAQIAR+AGA+ VL+A+EG YAQVRLRSGEVR+++ Sbjct: 126 VGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLAKEGAYAQVRLRSGEVRKIN 185 Query: 181 IECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTAAGRHP 240 + CRATIGEVGN E +L+KIGKAGA RWRG+RPTVRGVVMNPVDHPHGGGEG+T R P Sbjct: 186 VNCRATIGEVGNEEQSLKKIGKAGANRWRGIRPTVRGVVMNPVDHPHGGGEGRTGEAREP 245 Query: 241 VSPWGQQTKGKKTRSNKRTTSMIVSRR 267 VSPWG KG +TR+NKRT +MIV RR Sbjct: 246 VSPWGTPAKGYRTRNNKRTDNMIVRRR 272 >YPO0213 [J] COG0090 Ribosomal protein L2 Ype Yersinia pestis Length = 274 Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust. Identities = 194/269 (72%), Positives = 232/269 (86%), Gaps = 1/269 (0%) Query: 2 KPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQHYRVVD 61 KPTSPGRR +VKVVNP+L+KG+P A L+EK SK+ GRNNNG ITTRHIGGGHKQHYR+VD Sbjct: 7 KPTSPGRRHVVKVVNPELHKGKPYAPLLEKLSKSGGRNNNGRITTRHIGGGHKQHYRLVD 66 Query: 62 FRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGSEAPIKS 121 F+RNKDGIPA VER+EYDPNR+A+IAL+ Y DGER+YI+APKG+ GDQ+ SG +A IK+ Sbjct: 67 FKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVDAAIKA 126 Query: 122 GNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGEVRRVHI 181 GNTLP+RNIPVG+T+H VEM PGKG Q+AR+AGA V ++AR+G+Y +RLRSGE+R+V Sbjct: 127 GNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVARDGSYVTLRLRSGEMRKVQA 186 Query: 182 ECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTAAGRHPV 241 +CRAT+GEVGN EH LR +GKAGA+RWRG+RPTVRG MNPVDHPHGGGEG+ G+HPV Sbjct: 187 DCRATLGEVGNAEHMLRVLGKAGASRWRGIRPTVRGTAMNPVDHPHGGGEGRN-FGKHPV 245 Query: 242 SPWGQQTKGKKTRSNKRTTSMIVSRRGKK 270 +PWG QTKGKKTRSNKRT IV RR KK Sbjct: 246 TPWGVQTKGKKTRSNKRTDKFIVRRRSKK 274