BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0087.p         (131 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3012 [J] COG0197 Ribosomal protein L16/L10E Rso Ralstonia sol...   228   2e-60
NMB0149 [J] COG0197 Ribosomal protein L16/L10E Nme Neisseria men...   213   1e-55
NMA0122 [J] COG0197 Ribosomal protein L16/L10E NmA Neisseria men...   213   1e-55
VC2589 [J] COG0197 Ribosomal protein L16/L10E Vch Vibrio cholerae     187   4e-48
rplP [J] COG0197 Ribosomal protein L16/L10E Eco Escherichia coli...   184   4e-47

>RSc3012 [J] COG0197 Ribosomal protein L16/L10E Rso Ralstonia solanacearum
          Length = 138

 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/138 (83%), Positives = 124/138 (89%), Gaps = 9/138 (6%)

Query: 1   MLQPARRKYRKEQKGRNTGISHTRGTAVSFGX--------GRITARQIEAARRAMTRHIK 52
           MLQP RRKYRKEQKGRNTGI+ TRG AVSFG         GR+TARQIE+ARRAMTRHIK
Sbjct: 1   MLQPKRRKYRKEQKGRNTGIA-TRGNAVSFGEFGLKAMGRGRLTARQIESARRAMTRHIK 59

Query: 53  RGGRIWIRVFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMDGVDEALAREAFR 112
           RGGRIWIR+FPDKPIS+KPAEVRMGNGKGNPEYYVAEIQPGK+LYEMDGV E LAREAFR
Sbjct: 60  RGGRIWIRIFPDKPISKKPAEVRMGNGKGNPEYYVAEIQPGKMLYEMDGVGEELAREAFR 119

Query: 113 LAAAKLPLSTTFVVRQVG 130
           LAAAKLP++T+FVVRQVG
Sbjct: 120 LAAAKLPIATSFVVRQVG 137


>NMB0149 [J] COG0197 Ribosomal protein L16/L10E Nme Neisseria meningitidis
           MC58
          Length = 138

 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/139 (78%), Positives = 118/139 (84%), Gaps = 9/139 (6%)

Query: 1   MLQPARRKYRKEQKGRNTGISHTRGTAVSFGX--------GRITARQIEAARRAMTRHIK 52
           MLQP R KYRK+QKGRNTGI+ TRG  VSFG         GR+TARQIEAARRAMTRHIK
Sbjct: 1   MLQPTRLKYRKQQKGRNTGIA-TRGNKVSFGEFGLKAVGRGRLTARQIEAARRAMTRHIK 59

Query: 53  RGGRIWIRVFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMDGVDEALAREAFR 112
           RGGRIWIRVFPDKPI++KP +VRMG GKGN EYY+AEI+PGKVLYEMDGV E LAREAF 
Sbjct: 60  RGGRIWIRVFPDKPITEKPIQVRMGGGKGNVEYYIAEIKPGKVLYEMDGVPEELAREAFE 119

Query: 113 LAAAKLPLSTTFVVRQVGQ 131
           LAAAKLP+ TTFVVRQVGQ
Sbjct: 120 LAAAKLPIPTTFVVRQVGQ 138


>NMA0122 [J] COG0197 Ribosomal protein L16/L10E NmA Neisseria meningitidis
           Z2491
          Length = 138

 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/139 (78%), Positives = 118/139 (84%), Gaps = 9/139 (6%)

Query: 1   MLQPARRKYRKEQKGRNTGISHTRGTAVSFGX--------GRITARQIEAARRAMTRHIK 52
           MLQP R KYRK+QKGRNTGI+ TRG  VSFG         GR+TARQIEAARRAMTRHIK
Sbjct: 1   MLQPTRLKYRKQQKGRNTGIA-TRGNKVSFGEFGLKAVGRGRLTARQIEAARRAMTRHIK 59

Query: 53  RGGRIWIRVFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMDGVDEALAREAFR 112
           RGGRIWIRVFPDKPI++KP +VRMG GKGN EYY+AEI+PGKVLYEMDGV E LAREAF 
Sbjct: 60  RGGRIWIRVFPDKPITEKPIQVRMGGGKGNVEYYIAEIKPGKVLYEMDGVPEELAREAFE 119

Query: 113 LAAAKLPLSTTFVVRQVGQ 131
           LAAAKLP+ TTFVVRQVGQ
Sbjct: 120 LAAAKLPIPTTFVVRQVGQ 138


>VC2589 [J] COG0197 Ribosomal protein L16/L10E Vch Vibrio cholerae
          Length = 136

 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 109/137 (79%), Gaps = 10/137 (7%)

Query: 1   MLQPARRKYRKEQKGRNTGISHTRGTAVSFGX--------GRITARQIEAARRAMTRHIK 52
           MLQP R K+RK Q GRN G++  +GT VSFG         GR+TARQIEAARRAMTRHIK
Sbjct: 1   MLQPKRTKFRKVQTGRNRGLA--KGTEVSFGTFGLKAVGRGRLTARQIEAARRAMTRHIK 58

Query: 53  RGGRIWIRVFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMDGVDEALAREAFR 112
           R G+IWIRVFPDKPI++KP EVR G GKGN EY+VA+IQPGKV+YE+DGV E LAREAFR
Sbjct: 59  RQGKIWIRVFPDKPITEKPLEVRQGKGKGNVEYWVAQIQPGKVMYEVDGVPEELAREAFR 118

Query: 113 LAAAKLPLSTTFVVRQV 129
           LAA KLP  TTFV +QV
Sbjct: 119 LAARKLPFKTTFVTKQV 135


>rplP [J] COG0197 Ribosomal protein L16/L10E Eco Escherichia coli K12
          Length = 136

 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/137 (69%), Positives = 107/137 (78%), Gaps = 10/137 (7%)

Query: 1   MLQPARRKYRKEQKGRNTGISHTRGTAVSFGX--------GRITARQIEAARRAMTRHIK 52
           MLQP R K+RK  KGRN G++   GT VSFG         GR+TARQIEAARRAMTR +K
Sbjct: 1   MLQPKRTKFRKMHKGRNRGLAQ--GTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVK 58

Query: 53  RGGRIWIRVFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMDGVDEALAREAFR 112
           R G+IWIRVFPDKPI++KP  VRMG GKGN EY+VA IQPGKVLYEMDGV E LAREAF+
Sbjct: 59  RQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFK 118

Query: 113 LAAAKLPLSTTFVVRQV 129
           LAAAKLP+ TTFV + V
Sbjct: 119 LAAAKLPIKTTFVTKTV 135