BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0061.p (404 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 559 e-159 SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 398 e-110 BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 397 e-110 AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 394 e-109 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 146 8e-35 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 559 bits (1440), Expect = e-159, Method: Compositional matrix adjust. Identities = 267/400 (66%), Positives = 318/400 (79%), Gaps = 1/400 (0%) Query: 5 IRRAALSATACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADA 64 +++ A + A L AA AQ +GD +KIG+ITD+SG YAD DGQGGVEA++MAI D Sbjct: 3 LKKLAGALMAAGLGLAASGAHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIEDE 62 Query: 65 GGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKK 124 GG + GK +ELV ADHQNKADIAA+KAREW D+ G+DMLVGG NSA SLAM KVA EKK+ Sbjct: 63 GGKVLGKPIELVTADHQNKADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKR 122 Query: 125 VFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSL 184 VFI +GAGT R TNEEC YTI YAYDT ALA+GTG+A+ +QGGKSW+FLTADYAFG SL Sbjct: 123 VFIGIGAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSL 182 Query: 185 EKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAAN 244 E DT+ VVK+NGG VVG+ + PL+ SDFSS+LLQAQ+SKAQILGLA AGGD IN+IKAA Sbjct: 183 ENDTAAVVKANGGTVVGSVKHPLSASDFSSYLLQAQASKAQILGLANAGGDTINSIKAAK 242 Query: 245 EFGVNKTMKLAGLLIFINDTHSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKMKKMP 304 EFG+ KTMK+AGLL+FIND HSLGL +G+ +TD WYWD+ND TR +A RYF KMKKMP Sbjct: 243 EFGITKTMKIAGLLMFINDVHSLGLQTAEGLLMTDSWYWDMNDATRKFATRYFSKMKKMP 302 Query: 305 SMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHDMYL 364 S QA D SAV Y+KAV A G+ D DKV+ L+K ++NDFF S G +R DGR VHDMYL Sbjct: 303 SSLQAADYSAVSNYIKAVAAAGTDDPDKVIAQLKKTQLNDFF-SKGTIRADGRYVHDMYL 361 Query: 365 MEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 M+VK P+ESK+PWDY K+V TIPG+QA+ T AESKC L K Sbjct: 362 MQVKTPAESKKPWDYMKIVATIPGDQAFTTPAESKCPLLK 401 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/396 (50%), Positives = 267/396 (67%), Gaps = 1/396 (0%) Query: 10 LSATACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADAGGAIN 69 L AT +L + A A+ +KIG + D SG YADF G+ EA MA+ D GG + Sbjct: 5 LIATLAMVLAGSTAALADASDGKVKIGILNDQSGVYADFGGKSSYEAALMAVEDFGGKVL 64 Query: 70 GKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFISV 129 G VE+V ADHQNK DIA+N AR+W+D + VD ++ S+ +LA+ ++ EKKK+ I Sbjct: 65 GVPVEVVTADHQNKPDIASNIARQWYDTEQVDSIMELTTSSVALAVQAISKEKKKIDIVT 124 Query: 130 GAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEKDTS 189 GA TT T ++C+ Y +AYDT +LA GTG A+ +QGG SW+FLTADYAFG SLE++T Sbjct: 125 GAATTELTGKQCSPYGFHWAYDTHSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTG 184 Query: 190 EVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFG-V 248 VK NGG VVGA R PLAT+DFSSFLLQAQSS A+++GLA AG D NAIK A EFG V Sbjct: 185 NYVKENGGTVVGAVRHPLATTDFSSFLLQAQSSGAKVIGLANAGLDTSNAIKQAAEFGIV 244 Query: 249 NKTMKLAGLLIFINDTHSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKMKKMPSMFQ 308 +LA LL + + H LGL QG+ LT+G+YW+ ++++ + R+ + KMP+M Sbjct: 245 QGGQRLAALLFTLAEVHGLGLDAAQGLTLTEGFYWNRDEESAKFGKRFMERTGKMPNMVH 304 Query: 309 AGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHDMYLMEVK 368 AG SAV QYLKA++ G+ + + V L ++D F NG V P+GRM+HDMYL+EVK Sbjct: 305 AGTYSAVLQYLKAIEKAGTDETEAVAKELHALPVDDVFAKNGTVAPNGRMIHDMYLLEVK 364 Query: 369 KPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 KP ESK PWDY+K++ TIPG++A++ A+S C L K Sbjct: 365 KPDESKEPWDYFKVLATIPGKEAFIDPAQSGCELVK 400 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 397 bits (1020), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/381 (50%), Positives = 265/381 (69%), Gaps = 1/381 (0%) Query: 25 SAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADAGGAINGKKVELVFADHQNKA 84 +A+ + +KIG + D SG YADF G+ EA +MA D GG + G +E++ ADHQNK Sbjct: 20 AAEISDGKVKIGILNDQSGVYADFGGKWSYEAAKMAAEDFGGTVLGAPIEIITADHQNKP 79 Query: 85 DIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFISVGAGTTRQTNEECNAY 144 D+A+N AR+W+D + VD ++ S+ LA+ ++ EKKK+ I+ GA T+ T ++C Y Sbjct: 80 DVASNIARQWYDTEQVDSIMELTTSSVGLAVQALSKEKKKITINTGAATSELTGKQCTPY 139 Query: 145 TIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEKDTSEVVKSNGGNVVGATR 204 +AYDT ALA GTG ++ +QGG +WYFLTADYAFG SLE+ T++ V+S GG V+G+ R Sbjct: 140 GFHWAYDTHALAVGTGGSLVQQGGDTWYFLTADYAFGYSLEEQTTKFVESKGGKVLGSVR 199 Query: 205 VPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFG-VNKTMKLAGLLIFIND 263 PL+T+D+SSFLLQAQ+S A+++GLA AG D NAIK A EFG V +LA LL + + Sbjct: 200 HPLSTTDYSSFLLQAQASGAKVVGLANAGLDTSNAIKQAAEFGIVAGGQRLAALLFTLAE 259 Query: 264 THSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKMKKMPSMFQAGDASAVGQYLKAVK 323 H LGL QG+ LT+G+YWD +D++RA+ R+F + +MP+M QAG SAV QYLKA+K Sbjct: 260 VHGLGLEAAQGLTLTEGFYWDRDDESRAFGKRFFDRTGRMPNMIQAGTYSAVLQYLKAIK 319 Query: 324 AVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHDMYLMEVKKPSESKRPWDYYKLV 383 G+ + + V L + + D F +G V P+GRM++DMYLMEVKKP ESK PWDYYK++ Sbjct: 320 EAGTDETEAVAKKLHEMPVEDVFARHGKVGPNGRMIYDMYLMEVKKPEESKAPWDYYKVL 379 Query: 384 QTIPGEQAYMTKAESKCALWK 404 TIPG+QAYM ES C L K Sbjct: 380 ATIPGDQAYMKPEESGCPLVK 400 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/373 (51%), Positives = 264/373 (70%), Gaps = 1/373 (0%) Query: 33 IKIGFITDMSGTYADFDGQGGVEAIRMAIADAGGAINGKKVELVFADHQNKADIAANKAR 92 +KIG + D SG YA+F G+ EA +MA+ D GG + G VE+V ADHQNKAD+A+N AR Sbjct: 29 VKIGILNDQSGVYANFGGKYSYEAAKMAVEDFGGKVLGAPVEVVTADHQNKADVASNIAR 88 Query: 93 EWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFISVGAGTTRQTNEECNAYTIQYAYDT 152 +W+D + VD ++ +S+ LA+ ++ +KKK+ ++ GA TT T ++C+ Y +AYDT Sbjct: 89 QWYDTEQVDSIMELTSSSVGLAVQALSKDKKKITVNTGAATTELTGKQCSPYGFHWAYDT 148 Query: 153 TALARGTGAAITRQGGKSWYFLTADYAFGTSLEKDTSEVVKSNGGNVVGATRVPLATSDF 212 +LA GTG A+ +QGG SW+FLTADYAFG SLE++TS VK+NGG V+G+ R PLAT+D+ Sbjct: 149 YSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTSNFVKANGGKVLGSVRHPLATTDY 208 Query: 213 SSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFG-VNKTMKLAGLLIFINDTHSLGLPL 271 SSFLLQAQSS A+++GLA AG D NAIK A+EFG V +LA LL + + H LGL Sbjct: 209 SSFLLQAQSSGAKVIGLANAGLDTSNAIKQASEFGIVAGGQRLAALLFTLAEVHGLGLEA 268 Query: 272 TQGMYLTDGWYWDLNDQTRAWANRYFMKMKKMPSMFQAGDASAVGQYLKAVKAVGSTDAD 331 QG+ LT+G+YWD +D++R + R+ + MP+M G SAV YLKA++ G+ DAD Sbjct: 269 AQGLTLTEGFYWDRDDESRKFGERFKERTGAMPNMIHTGTYSAVLHYLKAIEKAGTDDAD 328 Query: 332 KVMDYLRKNRINDFFTSNGVVRPDGRMVHDMYLMEVKKPSESKRPWDYYKLVQTIPGEQA 391 V +++ +ND F +G V +GRM+HDMYLMEVKKP ESK+PWDYYK++ TIPG++A Sbjct: 329 AVAKAMKEMPVNDVFAKDGHVAANGRMIHDMYLMEVKKPDESKQPWDYYKVLATIPGKEA 388 Query: 392 YMTKAESKCALWK 404 +M +S C L K Sbjct: 389 FMDPTKSGCPLVK 401 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 146 bits (369), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 139/260 (53%), Gaps = 5/260 (1%) Query: 27 QAAGD-TIKIGFITDMSGTYADFDGQGGVEAIRMAIA--DAGGAINGKKVELVFADHQNK 83 QA G+ ++IG + M+G YA Q V R+A+A +A G I G+ +EL+ D N Sbjct: 33 QARGEAPLRIGMVDPMTGVYAAV-AQNEVTGARLAVAQINARGGILGRPIELLVEDSAND 91 Query: 84 ADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFISVGAGTTRQTNEECNA 143 KAR+ +RD V L+G VNS + A+ +V+ EKK + I G T T +C Sbjct: 92 VGTGVQKARKLIERDQVSFLIGDVNSGIAQAIAQVSNEKKVLHIVSGGHTDTITGSDCKW 151 Query: 144 YTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEKDTSEVVKSNGGNVVGAT 203 + T+ A + + GK W+F+T DYAFG +L+K + ++ GG + G Sbjct: 152 NVYRVCNTTSMEANAVANLLFSKYGKKWHFITPDYAFGHTLQKAAAADLQKLGGTITGNE 211 Query: 204 RVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFGVNKTMKLAGLLIFIND 263 PL T+DFS++L++A+++ +L + G D++N +K +FG+ K M +AGL + Sbjct: 212 LTPLGTTDFSAYLIKARAANPDVLLVLPQGSDMVNCLKQIAQFGIGKQMHIAGLQQELES 271 Query: 264 THSLGLPLTQGMYLTDGWYW 283 ++ G+++ + WYW Sbjct: 272 LEAMPPEARVGIWMFE-WYW 290