BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0003.p         (126 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0379 [S] COG2363 Uncharacterized small membrane protein Pae Ps...   107   7e-24
SA0540 [S] COG2363 Uncharacterized small membrane protein Sau St...   105   2e-23
BS_ywdK [S] COG2363 Uncharacterized small membrane protein Bsu B...   103   1e-22
BH3828 [S] COG2363 Uncharacterized small membrane protein Bha Ba...    93   2e-19
VC0897 [S] COG2363 Uncharacterized small membrane protein Vch Vi...    89   2e-18

>PA0379 [S] COG2363 Uncharacterized small membrane protein Pae Pseudomonas
           aeruginosa
          Length = 125

 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/119 (52%), Positives = 76/119 (63%)

Query: 4   RTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALLMPR 63
           R  + L A   F  V  GAF AHGLKK +S E LA++ T V YQ++HAL +  VALL  R
Sbjct: 3   RPFLLLAAFFGFTGVALGAFAAHGLKKQLSAEYLAVFQTGVHYQLIHALALFGVALLATR 62

Query: 64  LGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAACK 122
           L G  +  AG L   GI++FSGSLYLL L+G   LG +TPFGGV FLA WL +  AA +
Sbjct: 63  LDGRLVSAAGGLFTLGILLFSGSLYLLTLSGIGKLGIVTPFGGVSFLAGWLCLGLAAWR 121


>SA0540 [S] COG2363 Uncharacterized small membrane protein Sau
           Staphylococcus aureus N315
          Length = 122

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 78/119 (65%), Gaps = 1/119 (0%)

Query: 4   RTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALLMPR 63
           +  I LGALN  +AVG GAFGAHGL+  IS+  L++W  A TYQ+ H L ++ + ++   
Sbjct: 2   KLFIILGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGT 61

Query: 64  LGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAACK 122
                + WAG L+ AGI+ FSGSLY+L LT  ++LGAITP GGV F+  W+++  A  K
Sbjct: 62  TS-INVNWAGWLIFAGIIFFSGSLYILVLTQIKVLGAITPIGGVLFIIGWIMLIIATFK 119


>BS_ywdK [S] COG2363 Uncharacterized small membrane protein Bsu Bacillus
           subtilis
          Length = 113

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 1/103 (0%)

Query: 4   RTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALLMPR 63
           +  I LGA+N  +AVG GAFGAHGL+  I ++ L +WHT V Y + HALG+  VA L  +
Sbjct: 2   KVFIILGAINALLAVGLGAFGAHGLEGKIPDKYLQVWHTGVQYHMYHALGLFVVAFLADK 61

Query: 64  LGG-AALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFG 105
           L G  ++  AG LM AGIV+FSGSLY+L++T   +LGAITP G
Sbjct: 62  LSGIGSVTTAGWLMFAGIVLFSGSLYILSVTQISILGAITPLG 104


>BH3828 [S] COG2363 Uncharacterized small membrane protein Bha Bacillus
           halodurans
          Length = 121

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 1/120 (0%)

Query: 4   RTLIALGALNMFVAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALL-MP 62
           +  + LG++ M ++V  GAFGAHGL+  +SE M+  + T V YQ++H +G++ V L+ + 
Sbjct: 2   KLFLLLGSIVMGLSVIIGAFGAHGLEPRLSERMMKNYQTGVQYQMIHGIGILVVGLVGLK 61

Query: 63  RLGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAACK 122
            L  A L  AG     GI++FSGSLY +ALTG   LGAITP GG+ F+A W+L+  A  +
Sbjct: 62  MLPSALLSAAGWSFFVGILLFSGSLYAMALTGVTKLGAITPIGGLAFIAGWILLGIAVVR 121


>VC0897 [S] COG2363 Uncharacterized small membrane protein Vch Vibrio
           cholerae
          Length = 128

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 69/112 (61%), Gaps = 4/112 (3%)

Query: 16  VAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALLMPRLGGAA----LRW 71
           VAVG GAF AHGLKKM+S  +L ++ T V YQ +HAL ++   +L+      A     R 
Sbjct: 16  VAVGLGAFAAHGLKKMLSPYLLDVFETGVQYQFIHALALLVCGVLLLLPLHEAAHKGFRR 75

Query: 72  AGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGFLAAWLLVAWAACKQ 123
           A    L GIV FSGSLY LALTG +  G ITPFGGV F+  W+  ++AA K 
Sbjct: 76  AAQFFLVGIVCFSGSLYALALTGVKWFGPITPFGGVMFILGWIWFSYAAWKS 127