BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0134.p (213 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc2066 [T] COG4566 Response regulator Atu Agrobacterium tumefac... 179 5e-45 PA4196 [T] COG4566 Response regulator Pae Pseudomonas aeruginosa 162 6e-40 AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaci... 157 1e-38 CC0758 Non COG 157 2e-38 RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum 155 7e-38 >AGc2066 [T] COG4566 Response regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 202 Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 92/198 (46%), Positives = 129/198 (65%), Gaps = 1/198 (0%) Query: 8 VYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMPEISGFQL 67 VY+VDDD+AVR +L LLS+V I+ + F P FL A CLI D+RMP I+G +L Sbjct: 5 VYLVDDDDAVRKALILLLSTVGIKAKGFADPVVFLGQLPALEPGCLIFDIRMPAITGLKL 64 Query: 68 QDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMTLKHVAGN 127 Q++L E G D PVI +SGHG+I RA HNGAVDFL KP + Q +++ IQ + +A Sbjct: 65 QEKLAEEGVDWPVIVISGHGNIEACRRAFHNGAVDFLSKPVDEQDLIDAIQKAHRILAST 124 Query: 128 MQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRASVKDKLG 187 + A+ + +A L LTAREREILE++ +G +S+ IA L +S +TVD HRA++ KLG Sbjct: 125 LDAKALHAETRALLALLTAREREILERIALGFTSRQIADGLGLSPRTVDSHRAAIGLKLG 184 Query: 188 CQSTATLVRDVLMDFGSD 205 S A + R + ++ G+D Sbjct: 185 TTSQAEMTR-LWLEAGAD 201 >PA4196 [T] COG4566 Response regulator Pae Pseudomonas aeruginosa Length = 214 Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 82/189 (43%), Positives = 117/189 (61%) Query: 7 VVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMPEISGFQ 66 +VY+VDDD+ + S WLL SV ++ F FL A + +C++LDVRMP + G Sbjct: 8 LVYVVDDDQGMLESTVWLLESVGLKARPFTQGRDFLDACEGGRHACVLLDVRMPGMGGLN 67 Query: 67 LQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMTLKHVAG 126 +QD L G D+PVIFVSGH D+P+ VRA GAVDF+EKPYN Q +L+ +Q L A Sbjct: 68 VQDELLARGIDLPVIFVSGHADVPIVVRAFKAGAVDFIEKPYNEQLLLDSVQQALDRHAR 127 Query: 127 NMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRASVKDKL 186 + L RL +LT RER++L ++ G +S+ +A +L +SVKTVD++RA V ++ Sbjct: 128 RRRHHDLDAGLHERLDSLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMKRM 187 Query: 187 GCQSTATLV 195 Q+ LV Sbjct: 188 QAQTLPELV 196 >AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 218 Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 118/191 (61%) Query: 6 PVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMPEISGF 65 PVV+IVDDD ++R +L L S+ E F+ AFL+ + N CL+LDVR+P ISG Sbjct: 14 PVVFIVDDDVSMREALTDLFRSMKFDAEAFDSAAAFLEKANLNRHGCLLLDVRLPGISGL 73 Query: 66 QLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMTLKHVA 125 Q +L+ +G +P+IF++G GDIPMSVRA+ GAVDFL KP+ Q +L+ + ++ A Sbjct: 74 DFQVQLERVGNRMPIIFMTGFGDIPMSVRAMKAGAVDFLTKPFKEQDILDAVAAAMERDA 133 Query: 126 GNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRASVKDK 185 + + + + + LT RERE++ V+ G +K IA EL IS TV +HR +V K Sbjct: 134 SRRRESAQNEAVTSLAGQLTPREREVMGAVVRGLMNKQIAYELGISEVTVKLHRGNVMRK 193 Query: 186 LGCQSTATLVR 196 + +S A LVR Sbjct: 194 MEARSVADLVR 204 >CC0758 Non COG Length = 202 Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 78/194 (40%), Positives = 124/194 (63%), Gaps = 1/194 (0%) Query: 3 TNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMPEI 62 T+ PVV++VDDDE+ R SLA+LL S + + AFL A +I DVRMPE+ Sbjct: 2 TDAPVVHVVDDDESARESLAFLLESADFEVVAYASAPAFLDALPQARPGVVITDVRMPEM 61 Query: 63 SGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMTLK 122 SG L RL + +P++ ++GHGDIPM+V A+ +G +DFLEKP++ +ML+ ++ Sbjct: 62 SGQDLVARLSALKVKMPIVMITGHGDIPMAVEAMRSGVIDFLEKPFSESRMLDALKRAFA 121 Query: 123 HVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRASV 182 V + + LK R+++L+ RER++L+ V+ G ++K+IAR+L IS +TV+++RA + Sbjct: 122 TVEAAPVSDDQAVILK-RIESLSERERQVLDGVVAGHANKVIARDLGISPRTVEIYRAKL 180 Query: 183 KDKLGCQSTATLVR 196 K+ + A LVR Sbjct: 181 MTKMQADNLAALVR 194 >RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum Length = 210 Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 77/190 (40%), Positives = 116/190 (61%), Gaps = 1/190 (0%) Query: 8 VYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFL-KAYDANSLSCLILDVRMPEISGFQ 66 V++VDDDEA+R SL WLL + E FL + CLILDVRM +SG + Sbjct: 15 VFVVDDDEAMRDSLTWLLEGNGYNVRTYRSAEEFLVDDKRGEGVGCLILDVRMQGMSGPE 74 Query: 67 LQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMTLKHVAG 126 LQDRL +P++FV+GHGD+PM+V + GAVDF+EKP++ ++ E ++ L Sbjct: 75 LQDRLLAENNRMPIVFVTGHGDVPMAVSTMKKGAVDFIEKPFDESELRELVERMLSKART 134 Query: 127 NMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRASVKDKL 186 A ++ L LT RE+++LE+++ G+ +K IA +L IS+KTV+ HRA++ +KL Sbjct: 135 EDSAAREQKAANDLLSRLTTREQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKL 194 Query: 187 GCQSTATLVR 196 + A L+R Sbjct: 195 NVNTVADLLR 204