BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0116.p         (160 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1602 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, s...   204   8e-53
SMb20403 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase,...   163   1e-40
RSc1890 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...   142   2e-34
APE2213 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...   139   2e-33
CC0022 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, s...   138   4e-33

>PA1602 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Pae Pseudomonas aeruginosa
          Length = 163

 Score =  204 bits (518), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 115/156 (73%)

Query: 5   EPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSCV 64
           + +   VNG  + LD+A D PLL VLRNDL LNGPKFGCGLGECGACTVL+DGVA RSC+
Sbjct: 3   DALALTVNGQSLRLDVAPDTPLLYVLRNDLQLNGPKFGCGLGECGACTVLMDGVATRSCI 62

Query: 65  IPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTPS 124
            P+     R V TL+GL       P+QQAFIDEQ AQCGYC+NGM+MT KALL R+P PS
Sbjct: 63  TPVEAAVGRRVVTLEGLGDAAHPHPLQQAFIDEQAAQCGYCINGMVMTAKALLDRNPNPS 122

Query: 125 EDEIRHELDFNLCRCGTHVEILRAALRAVELQRGRQ 160
           + EIR EL +NLCRCGTHVEIL+A  RA E  +  Q
Sbjct: 123 DGEIRQELAYNLCRCGTHVEILKAVRRAAESLKEHQ 158


>SMb20403 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Sme Sinorhizobium meliloti
          Length = 165

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 105/151 (69%)

Query: 7   ITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSCVIP 66
           I+  VNG P  +D     PLL VLR++L LNG K+GCGLG+CG+CTV+VDG A  SC++P
Sbjct: 2   ISLTVNGSPHQIDADPATPLLYVLRDELALNGAKYGCGLGQCGSCTVVVDGEAVLSCMVP 61

Query: 67  LAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTPSED 126
           +  +  R +TT++GL       P+Q+AFI+ Q AQCGYC+ GM+M+  ALL R+  PSE+
Sbjct: 62  IMLLEGREITTIEGLGTIDEPGPLQEAFIELQAAQCGYCIPGMMMSAHALLRRNAQPSEE 121

Query: 127 EIRHELDFNLCRCGTHVEILRAALRAVELQR 157
           EIR  L  NLCRCGTH+ IL A  RA EL R
Sbjct: 122 EIREALATNLCRCGTHMRILAAIRRAGELMR 152


>RSc1890 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Rso Ralstonia solanacearum
          Length = 155

 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 100/155 (64%), Gaps = 3/155 (1%)

Query: 7   ITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSCVIP 66
           +   VN  PV ++     PLL VLR+ L L G KFGCG+  CGACTV VDG A RSCV+P
Sbjct: 1   MDLDVNRRPVKVECDPATPLLWVLRDHLSLTGTKFGCGVAACGACTVHVDGAAVRSCVLP 60

Query: 67  LAGVAARHVTTLDGL-EQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTPSE 125
           +A VA R +TT++GL E  G+   +QQA+IDEQ  QCGYC +GM+M    LL R P PS+
Sbjct: 61  VAAVAGRRITTIEGLAEAPGKRHALQQAWIDEQVPQCGYCQSGMLMAAADLLARQPDPSD 120

Query: 126 DEIRHELDFNLCRCGTHVEILRAALRAVE-LQRGR 159
            +I   +  NLCRCGT+  +  A  RA + L+ GR
Sbjct: 121 ADIDAAI-TNLCRCGTYPRVRTAIKRAAQALREGR 154


>APE2213 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Ape Aeropyrum pernix
          Length = 163

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 95/152 (62%)

Query: 7   ITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSCVIP 66
           +T  VNG   +  +     L++ LR+ L L G   GC    CGACTVLV+G A +SC + 
Sbjct: 11  VTLKVNGKTYTHHVPPRMLLVHFLRDVLGLTGTHVGCDTSNCGACTVLVNGKAVKSCTVY 70

Query: 67  LAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTPSED 126
              V    +TT++GLEQ+G+L P+Q+AF +  G QCG+C  GMIMT+   L R+ +P+E 
Sbjct: 71  TFMVDGAEITTIEGLEQNGKLHPIQEAFWENHGLQCGFCTPGMIMTLHDFLSRNKSPTES 130

Query: 127 EIRHELDFNLCRCGTHVEILRAALRAVELQRG 158
           E+R  ++ NLCRC  +V I+R+AL A E  RG
Sbjct: 131 EVRRAIEGNLCRCTGYVNIVRSALWAAERMRG 162


>CC0022 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Ccr Caulobacter vibrioides
          Length = 174

 Score =  138 bits (348), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 95/145 (65%), Gaps = 4/145 (2%)

Query: 7   ITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSCVIP 66
           +T  +NG PVS+  A + PLL VLR++L + G KFGCGL +CGACTV +DG   RSCV P
Sbjct: 1   MTLDINGKPVSVQAAPETPLLWVLRDELGMTGTKFGCGLAQCGACTVHMDGQPIRSCVTP 60

Query: 67  LAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTPSED 126
           +  V A  VTT++GL   G   PVQQA++     QCGYC +G IM+  ALL + P PS+ 
Sbjct: 61  IEAVGAAKVTTIEGL---GGQHPVQQAWVRHDVPQCGYCQSGQIMSACALLAQKPKPSDQ 117

Query: 127 EIRHELDFNLCRCGTHVEILRAALR 151
           +I   +  N+CRCG +  I RAA++
Sbjct: 118 DIDEAMAGNICRCGAYQRI-RAAIK 141