BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0096.p         (129 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2507 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit ...   115   3e-26

>PA2507 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit Pae
           Pseudomonas aeruginosa
          Length = 310

 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 83/113 (73%)

Query: 1   MAAKIFSTREVQDFLRLASGLDSEGGNPRTKQIVHRILSDLFKTIEDLEITSDEYWAGVA 60
           M  KI  T +VQ F   ASG  +E G+PRTK +V RIL D  K IE++++T DE+W  V 
Sbjct: 1   MTVKISQTADVQRFFEEASGQLNERGDPRTKALVRRILDDTAKLIEEMQVTPDEFWKAVD 60

Query: 61  YINRLGTAHEAGLLSPGLGLDRFLDMRMDAEDAALGIAGGTPRTIEGPLYVAG 113
           Y+NRLG+  EAGLL+ GLGL+ +LD+ +DA+DA  G+ GGTPRTIEGPLYVAG
Sbjct: 61  YLNRLGSRQEAGLLAAGLGLEHYLDLLLDAQDAEAGLTGGTPRTIEGPLYVAG 113