BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0094.p (326 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2510 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 267 3e-71 PA3594 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 159 1e-38 RSp0823 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 147 2e-35 PA5029 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 147 3e-35 BS_alsR [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis 146 8e-35 >PA2510 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 290 Score = 267 bits (682), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 147/290 (50%), Positives = 200/290 (68%), Gaps = 6/290 (2%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 M++R L+YF A+A T NFTRA+EQLHIAQPPLSRQIQ LEE LGV LL R RPLRLTEA Sbjct: 1 MELRHLRYFQALARTLNFTRAAEQLHIAQPPLSRQIQQLEEMLGVALLERG-RPLRLTEA 59 Query: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 GR F+EQ+ +L++L+ + ++T++IG QRQ IGFV S LYG LP L+R LR PE+ Sbjct: 60 GRFFHEQSATLLDQLESICDSTRRIGQGQRQWFGIGFVPSALYGVLPELIRHLRGD-PEL 118 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFALAGSNQ 180 ++ LLE+T++QQ ALKSGRID+GFGRIR +D + + VL EE LV A+P L G Q Sbjct: 119 ELGLLEMTTLQQVEALKSGRIDIGFGRIRIDDPAIRQSVLSEEPLVAALPAGHPLLG--Q 176 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGI 240 +SL+ + + ++YP +PRPS+ADH+L+L + E+QTA+GLVAA G Sbjct: 177 PLSLERLSREPFVLYPGQPRPSYADHVLALFATHGLSLRVTQWANEMQTAIGLVAAGLGA 236 Query: 241 CLIPASARL--RNDLHYRLIDDARATSPIILTHRINDNAWYIEAVKRLVA 288 L+PAS +L R+D+ Y+ + DA TSPII++ R D + ++ L+ Sbjct: 237 TLVPASVQLQHRDDVAYQALADASLTSPIIVSRRQGDGSPHLRRCLALIG 286 >PA3594 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 295 Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/269 (36%), Positives = 150/269 (55%), Gaps = 3/269 (1%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 MD+RQL+YF+AVA +F RA+ +L I+QP LS I+ LEE+LG QLLLRN++ ++LT A Sbjct: 1 MDLRQLRYFIAVAEELHFGRAAARLFISQPALSFDIKKLEEQLGTQLLLRNNKSVKLTGA 60 Query: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 G+V +A +L + +++K TQ L +GFV S LY GLP + + + +P + Sbjct: 61 GQVLLVEARNLLLQAEKVKRLTQLSAEGDVGQLRVGFVNSMLYRGLPRAMSRFEREHPNM 120 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFALAGSNQ 180 ++ L E+ S +Q AL+ G+ID+GF A + L + + +P LAG Sbjct: 121 EVVLGEMNSAEQAQALQRGQIDLGFVHWGRLPAEIVSEPLISDPFLCCLPAGHRLAG-QA 179 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGI 240 R+ L E+ + I++P+ P + D I++ D P HE R QT +V G+ Sbjct: 180 RLDLAELRDEDFILFPRHVSPHYHDLIIARCVDAGFSPRIRHEARLWQTVAAMVGLGMGV 239 Query: 241 CLIPASARL--RNDLHYRLIDDARATSPI 267 LIP + L RN++ Y I+ A A S I Sbjct: 240 ALIPETLCLAWRNEVRYLEIEPAGARSEI 268 >RSp0823 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 335 Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/256 (39%), Positives = 145/256 (56%), Gaps = 6/256 (2%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 ++ QL+ FVAVA +F RA+E+LH+ QPPLSRQ++LLE ++G +LL RNSR +RLT A Sbjct: 39 FELSQLRCFVAVAEELHFGRAAERLHMTQPPLSRQVRLLEHQVGTELLERNSRSVRLTAA 98 Query: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 GR F A ++L ++ +++ +L+IGF AS YG LP LV +R P V Sbjct: 99 GRSFLPDAARLLRLAEEAAATARRVATGAAGSLAIGFTASVGYGLLPSLVSAVRAASPGV 158 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFALAGSNQ 180 + L E+ S Q AL + +ID+G R +A +E LVLA+P + A A Q Sbjct: 159 RLTLKEMVSGAQLEALDARQIDMGLLRPPVEHGELAAEPCAQEALVLAVPEATA-ADWPQ 217 Query: 181 RVSLKEVHGQKLIVY-PKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESG 239 R +L++ G+ L++Y P E R F + L + P V V +I + L LV A G Sbjct: 218 RPALRDCEGRPLLMYSPYEAR-YFHQLVSGLFERAGVLPDIVEYVSQIHSMLALVRAGIG 276 Query: 240 ICLIPASARLRNDLHY 255 LIPA+A + LH+ Sbjct: 277 AALIPAAASM---LHF 289 >PA5029 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 301 Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 161/298 (54%), Gaps = 8/298 (2%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 M++R L+YF+AVA +F RA+E+L I+QPPLS+QIQ LEEE+G +L R +R + LT+A Sbjct: 1 MELRHLRYFIAVAEELHFGRAAERLGISQPPLSQQIQALEEEIGARLFERTNRRVELTDA 60 Query: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLSIGFVASTLY-GGLPMLVRKLRQHYPE 119 GR+F +++ Q+L ++D+ ++ L + L IGF +S + +P + R+ YP+ Sbjct: 61 GRLFLDESRQVLAQVDKAVLLARRAHLGELGELKIGFTSSAPFTSTIPSSIHAFRKAYPD 120 Query: 120 VDIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFAL-AGS 178 V + L E++S Q AL + VG R + V + L E LV + L AGS Sbjct: 121 VHLDLQEMSSRQVLKALLEESLQVGVIRPLALPDAVHWVELFREPLVAVLRADHPLAAGS 180 Query: 179 NQRVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAES 238 +++ + + + +P+ D +++L P E E T +GLV+A Sbjct: 181 EDGLAIAALAEEPFVFFPRSYGTGLYDQVIALTRQAGFSPRIAQEASEAMTIIGLVSAGL 240 Query: 239 GICLIPAS-ARLRND-LHYRLIDDARATSPIILTHRINDNA----WYIEAVKRLVADM 290 G+ ++PAS R R D + YR + D AT+ + L R N+ + +I+ V R A + Sbjct: 241 GVSILPASFRRTRVDGVVYRTLSDPEATTAVWLVRRQNEGSPLALSFIDLVTREAASL 298 >BS_alsR [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis Length = 302 Score = 146 bits (368), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 147/278 (52%), Gaps = 3/278 (1%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 M++R L+YF+AVA +F +A+ +L++ QPPLS+QI+ LEEE+GV LL R R + LT A Sbjct: 1 MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKRTKRFVELTAA 60 Query: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 G +F L ++ Q Q+ ++ L IGFV S Y LP +VR+ R+ +P V Sbjct: 61 GEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGFVGSATYEFLPPIVREYRKKFPSV 120 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFALAGSNQ 180 I+L E++S +Q L G ID+G + + VLA+P L S + Sbjct: 121 KIELREISSSRQQEELLKGNIDIGILHPPLQHTALHIETAQSSPCVLALPKQHPLT-SKE 179 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGI 240 ++++++ + +I KE P+ + P V E E Q +GLV+A G+ Sbjct: 180 SITIEDLRDEPIITVAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAGIGM 239 Query: 241 CLIPASAR--LRNDLHYRLIDDARATSPIILTHRINDN 276 +P+SA+ D+ YR +D + + ++ +R +++ Sbjct: 240 TFVPSSAKKLFNLDVTYRKMDQIQLNAEWVIAYRKDNH 277