BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0091.p (568 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 339 1e-92 RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 330 4e-90 RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 325 2e-88 RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 323 5e-88 STM1626 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 323 8e-88 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 339 bits (869), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 191/366 (52%), Positives = 249/366 (68%), Gaps = 7/366 (1%) Query: 199 VYKAKIMRPVDEFFALLDARTAEQ-------VESARAQATQMATLFYSLIAIALVVLACT 251 +Y+ + R D ++ L+D Q V A AQ L +A ++ T Sbjct: 147 LYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDVSEAAAQGANAKIQMIVLAVLATLLAIAT 206 Query: 252 LMLVYHAIRNPLAHAASVARRVAHGDLTAQIDPEIKGETGELLEALTIMQSGLQTIVLDV 311 + I P+ HA +A VA G+LT ++ + + E G LL AL M L IV V Sbjct: 207 GAFITRTITRPINHAMHLAEAVAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQV 266 Query: 312 RNGAQYINTSANEIASGTLDLSSRSEQQASSLEETASSMEELTSTVKQNAGNARLASELA 371 R G I +++E+ASG +DLSSR+EQQASSLEETA++ME+LTSTVKQNA NA+ AS LA Sbjct: 267 RGGTDTITRASSEVASGNIDLSSRTEQQASSLEETAAAMEQLTSTVKQNADNAQEASRLA 326 Query: 372 NTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILALNAAVEAARAG 431 + AS VA +GG+ V + TM IN SS++IVDII VIDGIAFQTNILALNAAVEAARAG Sbjct: 327 SNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAG 386 Query: 432 EQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAGSTMREVVESVQ 491 EQGRGFAVVA EVRSLAQRSAAAAKEIK LI++SV V G+ V EAG +R+VV +Q Sbjct: 387 EQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQ 446 Query: 492 RVTEIITGISNASQEQASGIEQIQQAINQMDQVTQQNAALVEQASAASESMQMQAHKLTD 551 VT I++ IS +S+EQ+ GIEQI +AI QMD+ TQ+NA+LVE+++ A++++Q QA++L D Sbjct: 447 NVTNIVSEISASSREQSDGIEQINEAITQMDKATQENASLVEESATAAQALQDQANQLAD 506 Query: 552 LVGAFK 557 +V FK Sbjct: 507 MVSTFK 512 >RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 600 Score = 330 bits (847), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 204/354 (57%), Positives = 252/354 (71%), Gaps = 6/354 (1%) Query: 215 LDARTAEQVESARAQATQMATLFYSLIAIALVV-----LACTLMLVYHAIRNPLAHAASV 269 LD AEQ ++A A + F LI A+VV +AC L AI PL+ Sbjct: 166 LDRNQAEQAKAAYEGAVTRSQNFLWLIIGAIVVGILSAVACAFGL-DRAISVPLSRMLGS 224 Query: 270 ARRVAHGDLTAQIDPEIKGETGELLEALTIMQSGLQTIVLDVRNGAQYINTSANEIASGT 329 ++ G+LT QI + E G L L MQ GL + +R G+ I ++ +IA+G Sbjct: 225 FGEISRGNLTEQIVVTSQDEMGALTRGLQDMQRGLIRTIETMRGGSDSIASATKQIAAGN 284 Query: 330 LDLSSRSEQQASSLEETASSMEELTSTVKQNAGNARLASELANTASGVAVRGGEVVARVV 389 +DLS R+E+QASSLEETASSMEELTS VKQNA NAR AS LA AS +AV+GGEVV RVV Sbjct: 285 MDLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASTLAVNASDIAVKGGEVVGRVV 344 Query: 390 DTMGAINESSKRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQ 449 +TM IN+SSK+I DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQ Sbjct: 345 ETMAGINDSSKKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQ 404 Query: 450 RSAAAAKEIKTLIDNSVSKVEAGSTLVNEAGSTMREVVESVQRVTEIITGISNASQEQAS 509 RSA AAKEIK LI +SV +VE G+TLV EAG+ + EVV +V+RVT+I+ IS AS EQ+S Sbjct: 405 RSAGAAKEIKELISDSVGRVENGTTLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSS 464 Query: 510 GIEQIQQAINQMDQVTQQNAALVEQASAASESMQMQAHKLTDLVGAFKTPTAMG 563 GIEQ+ QA+NQMD+VTQQNAALVE+A+AA++S++ QA L + V +F+ P G Sbjct: 465 GIEQVNQAVNQMDEVTQQNAALVEEAAAAAQSLEEQARLLRETVASFRLPQGGG 518 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 325 bits (833), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 194/301 (64%), Positives = 238/301 (79%), Gaps = 5/301 (1%) Query: 264 AHAASVARRVAHGDLTAQI--DPEIKGETGELLEALTIMQSGLQTIVLDVRNGAQYINTS 321 A+AA VA R+A GDL+ +I P+ + LL A+ M+ L + +R ++ I T+ Sbjct: 227 AYAAEVANRIAGGDLSVEIATRPD---DRDSLLYAMGRMRGALVQTIGRIRGASETIGTA 283 Query: 322 ANEIASGTLDLSSRSEQQASSLEETASSMEELTSTVKQNAGNARLASELANTASGVAVRG 381 EIASG LDLSSR+EQQASSLEETAS+MEEL STV+QNA NA A++LA +AS VAVRG Sbjct: 284 TREIASGNLDLSSRTEQQASSLEETASAMEELMSTVQQNADNANQANQLAVSASDVAVRG 343 Query: 382 GEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 441 G+VV+RVV+TMG+IN SS++IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 344 GDVVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 403 Query: 442 TEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAGSTMREVVESVQRVTEIITGIS 501 EVRSLAQRSAAAAKEIK LID+SV+ V+AGS LV EAG+TMRE+V SV+RVT+I+ I+ Sbjct: 404 GEVRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEIT 463 Query: 502 NASQEQASGIEQIQQAINQMDQVTQQNAALVEQASAASESMQMQAHKLTDLVGAFKTPTA 561 ASQEQ SGIE++ A+ Q+D TQQNAALVEQA+AA++S+Q QA LT +V F+ Sbjct: 464 AASQEQRSGIEEVSHAVTQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPT 523 Query: 562 M 562 M Sbjct: 524 M 524 >RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 323 bits (829), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 203/357 (56%), Positives = 254/357 (71%), Gaps = 15/357 (4%) Query: 212 FALLDARTAEQVESARAQATQMATLFYSLIAIALVVLACTLMLVYHAIRN--------PL 263 FA D + V + + +L +LIAI +V A TL + + IRN P Sbjct: 163 FAPWDWNISSAVFLQEVETAYVRSLIANLIAILVVGGAVTLAM-FLIIRNVQRGLGGEP- 220 Query: 264 AHAASVARRVAHGDLTAQID--PEIKGETGELLEALTIMQSGLQTIVLDVRNGAQYINTS 321 A+A +ARR+A GDL ++ P+ + +L A+ MQ L + ++ A I ++ Sbjct: 221 AYATEIARRIADGDLAVRVQTRPD---DRNSMLFAMARMQQQLTGTIGHIKTSADSIASA 277 Query: 322 ANEIASGTLDLSSRSEQQASSLEETASSMEELTSTVKQNAGNARLASELANTASGVAVRG 381 +IA+G DLS R+E+QASSLEETASSMEELTS VKQNA NAR AS LA AS +AV+G Sbjct: 278 TQQIATGNADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASTLAVNASDIAVKG 337 Query: 382 GEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 441 GEVV RVVDTM IN+SSK+I DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 338 GEVVGRVVDTMAGINDSSKKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVA 397 Query: 442 TEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAGSTMREVVESVQRVTEIITGIS 501 EVRSLAQRSA AAKEIK LI +SV +VE G+TLV EAG+ + EVV +V+RVT+I+ IS Sbjct: 398 GEVRSLAQRSAGAAKEIKVLISDSVGRVENGTTLVAEAGTVIDEVVVAVKRVTDIMGEIS 457 Query: 502 NASQEQASGIEQIQQAINQMDQVTQQNAALVEQASAASESMQMQAHKLTDLVGAFKT 558 AS EQ+SGIEQ+ QA+NQMD+VTQQNAALVE+A+AA+ S++ QA L D V +F+T Sbjct: 458 AASDEQSSGIEQVNQAVNQMDEVTQQNAALVEEAAAAALSLEEQATLLRDAVASFRT 514 >STM1626 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 541 Score = 323 bits (827), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 185/330 (56%), Positives = 239/330 (72%), Gaps = 1/330 (0%) Query: 229 QATQMATLFY-SLIAIALVVLACTLMLVYHAIRNPLAHAASVARRVAHGDLTAQIDPEIK 287 Q T++ +F +ALV+ T M++ + PL +AS R+A GDLT +P + Sbjct: 199 QRTRLGMMFMIGAFTLALVLTLMTFMVLRRTVIQPLQQSASRIERIAAGDLTMADEPTGR 258 Query: 288 GETGELLEALTIMQSGLQTIVLDVRNGAQYINTSANEIASGTLDLSSRSEQQASSLEETA 347 E G L L MQ LQ V VR GA+ I +EI +G DLSSR+EQQA+++E+TA Sbjct: 259 SEIGRLSHHLQQMQHALQQTVGAVRQGAEEIYRGTSEITAGNTDLSSRTEQQAAAIEQTA 318 Query: 348 SSMEELTSTVKQNAGNARLASELANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIA 407 +SME+LT+TVKQNA NA AS+LA ASG A RGG++V+ VV TMG I+ SSK+I +I A Sbjct: 319 ASMEQLTATVKQNADNAHHASKLAEDASGKASRGGQMVSGVVQTMGNISTSSKKISEITA 378 Query: 408 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVS 467 VI+ IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LA RSA AAKEI+ LI SVS Sbjct: 379 VINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLIGASVS 438 Query: 468 KVEAGSTLVNEAGSTMREVVESVQRVTEIITGISNASQEQASGIEQIQQAINQMDQVTQQ 527 +E GS V AGSTM E+V++V+RVT+I+ I+ AS EQ+ GI Q+ QAI++MD+VTQQ Sbjct: 439 LIEQGSEEVIAAGSTMNEIVDAVKRVTDIMLDIAAASDEQSRGIVQVSQAISEMDRVTQQ 498 Query: 528 NAALVEQASAASESMQMQAHKLTDLVGAFK 557 NA+LVE+ASAA+ S++ QA +LT V AF+ Sbjct: 499 NASLVEEASAAARSLEEQAARLTQAVDAFR 528