BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0061.p         (198 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA650 [K] COG1309 Transcriptional regulator Atu Agrobacterium ...    89   8e-18
PA4831 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer...    87   2e-17
SMa1887 [K] COG1309 Transcriptional regulator Sme Sinorhizobium ...    84   2e-16
mlr2120 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...    77   2e-14
mlr2831 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...    77   3e-14

>AGpA650 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 188

 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 21/180 (11%)

Query: 1   MMVIMQSKPTRKQVSHDR--IVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESR 58
           M  I++ K +R+Q++ +R  I+DVASR  +  G   V VA++MK AG+THGGFY HF S+
Sbjct: 1   MRRILKMKVSREQMAENRRRILDVASRLFKDKGFEAVSVAEVMKAAGMTHGGFYGHFTSK 60

Query: 59  NALVSEAMRHAWQDTSQALTNAMARRVAAGESRFVALVNCYLHDSHLEKIEQGCVIAALS 118
           + LV++ + HA    S             G+  F   V  YL   H +    GC  A L+
Sbjct: 61  DDLVAQTLAHALAADSD------------GDGEFSDFVRSYLAPRHRDNPGNGCPTAGLA 108

Query: 119 SEMTRLDEAARGD-AKRLVAQLIALARSCLPPGCDPANGAIVA----STMTGALQLARTL 173
           + +     AA+   A+ L AQ+  + ++   P  DPA+G   A    + M GA+ LAR +
Sbjct: 109 AAIRHQTPAAKAAMAEGLRAQIARIEKAL--PAQDPADGRRTAIGSWAAMVGAVILARAV 166


>PA4831 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 186

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 11/193 (5%)

Query: 5   MQSKPTRKQVSHDRIVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESRNALVSE 64
           M+     KQ +  RIV+ A+R  R+ G    G+  +MK  GLTHGGFYAHF+S++ LV  
Sbjct: 1   MRYPEDHKQKTRRRIVEEAARLFRQDGVGATGLQPLMKALGLTHGGFYAHFKSKDDLVET 60

Query: 65  AMRHAWQDTSQALTNAMARRVAAGESRFVALVNCYLHDSHLEKIEQGCVIAALSSEM-TR 123
           A+RHA      A  + +   +A  E     L+  YL   H +    GC +  LS+E+  R
Sbjct: 61  ALRHAA-----AQLDEITAPLAEAERPLALLIEQYLSPRHRDNPGAGCPLPTLSAELGQR 115

Query: 124 LDEAARGDAKRLVAQLIALARSCLPPGCDPANGAI-VASTMTGALQLARTLGGKQ-GREL 181
              +   D+  +V + +A+  + L  G D    A+ + +++ GALQL+R++  +   + +
Sbjct: 116 GTPSPTTDS--IVRKRLAMIEAAL-EGEDAGERAVLLLASLVGALQLSRSVQDEALSQRI 172

Query: 182 LALARKQLINQFD 194
           L   RK+L+ Q +
Sbjct: 173 LEATRKKLLEQME 185


>SMa1887 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 200

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 92/177 (51%), Gaps = 16/177 (9%)

Query: 10  TRKQVSHDR--IVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESRNALVSEAMR 67
           +R Q   +R  ++DVASR  R+ G +G+G+ D+MK AGLT GGFY  FES++ L ++A R
Sbjct: 4   SRAQAEANREAVIDVASRLFRKHGFDGIGLKDLMKGAGLTQGGFYKQFESKDDLAAQASR 63

Query: 68  HAWQDTSQALTNAMARRVAAGESRFVALVNCYLHDSHLEKIEQGCVIAALSSEMTR--LD 125
            A +    AL    A   A  +  F A+V  YL  +H E+   GC + AL S+  R  +D
Sbjct: 64  RALE---SALRRWSAAAAANPQHPFGAVVAFYLSMAHREEKMDGCPVVALGSDAARQGVD 120

Query: 126 -----EAARGDAKRLVAQLIALARSCLPPGCDPANGAIVASTMTGALQLARTLGGKQ 177
                EA   +   ++ + I  A    P G        + STM GA+ L+R +  +Q
Sbjct: 121 VKASFEAGIREYLEVLGEWIGAADGEEPDG----KAMAILSTMVGAVLLSRAVNDEQ 173


>mlr2120 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 195

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 5   MQSKPTRKQVSHDRIVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESRNALVSE 64
           M+    RK  S  RI++VAS   R  G    G+A IM +AG+T+G FY HF+S+  LV E
Sbjct: 1   MRYDKGRKDASRSRIMEVASHRFRGDGIAASGLASIMSDAGMTNGAFYPHFQSKADLVRE 60

Query: 65  AMRHAWQDTSQALTNAMARRVAAGESRFVALVNCYLHDSHLEKIEQGCVIAALSSEMTRL 124
           +M  A +      T +   + A         +  YL   H +  + GC  AAL  E+ R 
Sbjct: 61  SMASALE------TQSQQLQQALASGGLELAMAMYLSPEHRDHPQTGCASAALLPEIARQ 114

Query: 125 DEAARG-DAKRLVAQLIALARSCLPPGCDPANGAI-VASTMTGALQLARTLGGKQ 177
               R    ++L+  +  LA+   P   DP   A+ V + + GALQLAR + G +
Sbjct: 115 PPETRSLYTEKLLTLVHQLAKDLPPRTRDPEGVALGVFAALIGALQLARAVEGTE 169


>mlr2831 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 193

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 8   KPTRKQVSHDR--IVDVASRAIRRAGANGVGVADIMKEAGLTHGGFYAHFESRNALVSEA 65
           +  R Q + +R  +++VASR  R  G +G+G+ D+MK AGLT G FY  FES+  L ++A
Sbjct: 3   RVNRTQAAENRETVINVASRLFRERGFDGIGLKDLMKGAGLTQGAFYKQFESKEDLAAQA 62

Query: 66  MRHAWQDTSQALTNAMARRVAAGESRFVALVNCYLHDSHLEKIEQGCVIAALSSEMTRLD 125
            + A +  +   ++A A   A  E+   A+++ YL   H  +   GC I AL S+  R  
Sbjct: 63  SKRAMESATHRWSDATA---ANPENPLEAVISFYLSMGHRGERMDGCPIVALGSDAARQG 119

Query: 126 EAARGDAKRLVAQ-LIALARSCLPPGCDPANGAIVA--STMTGALQLARTL 173
           +  +   +  + + L  L R       + +N   +A  STM GA+ L+R +
Sbjct: 120 QDVKASFEAGINEHLEILGRFIAEANGEQSNSKAMAILSTMVGAVLLSRVV 170