BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0058.p         (310 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...   107   3e-23
STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal...   106   7e-23
RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    96   1e-19
RSp0840 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    89   2e-17
RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    87   5e-17

>RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 543

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 155/316 (49%), Gaps = 39/316 (12%)

Query: 4   FANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTK-ERLVSDWYRT 62
            ++M+IG RL   FA+       VVAL I    GIAA   + + +  TK  ++VS+ Y  
Sbjct: 3   ISDMRIGVRLGAAFAL-------VVALLI----GIAAVGIQRLDDNNTKMGQIVSERYSL 51

Query: 63  IHTSVR------RTTAIAKS----SDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQE 112
           I  S +      +   I  +    + P     +  D AA  + + +    +E L+ +DQ 
Sbjct: 52  IALSNQIKNNGYKANGILSNLLLVTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQG 111

Query: 113 KAVFTKLGEVRKDY-IKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQ 171
           KA+F +  + R  Y    R   +   A+   +EA  +  G        Y  L+ +++  Q
Sbjct: 112 KALFKEQFDARSAYGASVRKFFALVDAD-NVQEARALYQGDMSRLQDRYYVLVDKMVDHQ 170

Query: 172 RANIDQVAAHIQTVYRESRNLMLALAVLQVVL----GWLFARTLALGITRPLEQAVEVAE 227
              ++   +        ++  M+ LAVL  +L    G    RT    ITRP+  A+ +AE
Sbjct: 171 AGEMEHDVSEAAAQGANAKIQMIVLAVLATLLAIATGAFITRT----ITRPINHAMHLAE 226

Query: 228 AVAAGDLTH--RIDERLAARGDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIA 285
           AVA G+LTH   +D +     DE G+L+ AL  M  NL  IV QVRGGTD I  AS E+A
Sbjct: 227 AVAQGNLTHLLEVDTQ-----DEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVA 281

Query: 286 TGNLDLSARTERQAGA 301
           +GN+DLS+RTE+QA +
Sbjct: 282 SGNIDLSSRTEQQASS 297


>STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella
           typhimurium LT2
          Length = 521

 Score =  106 bits (264), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 108/193 (55%), Gaps = 11/193 (5%)

Query: 113 KAVFTKLGEVRKDYIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQR 172
           + + T++ E R+ Y++ R  I +       + A Q +        K Y D +Q+L+ +Q 
Sbjct: 112 QKIITEIREARQQYLESRFRILQDIQSHNRQAAIQEMMTRTVQVQKVYKDKVQELIAVQD 171

Query: 173 ANIDQVAAHIQTVYRESRNLMLALAVLQV----VLGWLFARTLALGITRPLEQAVEVAEA 228
           A +      ++  ++ +R L++ LA++ +    V+GW   R+    ITRPL++AV  AEA
Sbjct: 172 AQMHNAGVQVEGDFKTNRTLLITLALISIAAGCVMGWYIVRS----ITRPLDEAVRFAEA 227

Query: 229 VAAGDLTHRIDERLAARGDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGN 288
           +A GDLT  I        DETG L+ AL AM   L  IV +V+ G+++I+TA+ +I  GN
Sbjct: 228 IADGDLTRHI---TTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTAAAQIVAGN 284

Query: 289 LDLSARTERQAGA 301
            DL+ARTE QA +
Sbjct: 285 QDLAARTEEQASS 297


>RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 524

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 70/97 (72%), Gaps = 5/97 (5%)

Query: 206 LFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDERL-AARGDETGKLMHALHAMTGNLA 264
           +  RTL     RPLE+A+ V E +AAGDL  R+DE   A R DET +LMHA+ +M  +L 
Sbjct: 213 VLGRTL----VRPLERAIHVFERMAAGDLATRMDEPTRAGRRDETARLMHAVASMQSSLQ 268

Query: 265 RIVGQVRGGTDAIATASKEIATGNLDLSARTERQAGA 301
           ++VGQVR G+D+IA+A+K+IA GN DLS RTE+QA +
Sbjct: 269 KMVGQVRTGSDSIASATKQIAAGNADLSQRTEQQASS 305


>RSp0840 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 518

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 63/87 (72%), Gaps = 3/87 (3%)

Query: 215 ITRPLEQAVEVAEAVAAGDLTHRIDERLAARGDETGKLMHALHAMTGNLARIVGQVRGGT 274
           I RPL+QA+ +A+ VA GDL+ RID R A   DETG+L+ AL +M  NLA IV +V   T
Sbjct: 212 IVRPLDQALHLADNVAQGDLSTRIDSRAA---DETGQLVRALESMRANLATIVQEVHEST 268

Query: 275 DAIATASKEIATGNLDLSARTERQAGA 301
           D IATAS ++A G+ DLS+RTE+QA +
Sbjct: 269 DTIATASGQVAAGSTDLSSRTEQQAAS 295


>RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 608

 Score = 87.0 bits (214), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 66/99 (66%), Gaps = 3/99 (3%)

Query: 201 VVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDERLAARGDETGKLMHALHAMT 260
           +V G L   +L   IT PL +A+E AE +  GDLTH I      R DETG+++ AL  M 
Sbjct: 200 IVGGGLLTWSLRRSITVPLNRAIEQAEHITRGDLTHAIH---VDRADETGRMLLALQRMQ 256

Query: 261 GNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQA 299
            +L  +VGQVR G+DAIA+A+++IA GN DLS RTE+QA
Sbjct: 257 ESLQGMVGQVRTGSDAIASATQQIAAGNADLSQRTEQQA 295