BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0043.p (293 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 306 5e-83 RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 302 5e-82 RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 301 1e-81 RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 296 4e-80 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 293 2e-79 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 306 bits (783), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 169/277 (61%), Positives = 205/277 (74%) Query: 1 VTQPILASVAMAGRVADYDLTARSVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVI 60 + P+ +A +A+ DLT GR+E L SL M + L IVG VR + I Sbjct: 218 LIHPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAI 277 Query: 61 QHASREIATGNADLSRRTESQASSLEETASAMEELTSTVQNNAENARQADQLAGSASRLA 120 + EIA GN DLS RTE QA+SLEETA++ME+LT+TV+ NAENARQA QLA SAS A Sbjct: 278 YSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETA 337 Query: 121 ERGGEVVSNVVQTMDEIKTSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 180 ++GG+VV++VVQTM EI SS++I DI SVIDGIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 338 QKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFA 397 Query: 181 VVASEVRSLAQRSASAAKEIKELISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMS 240 VVA EVR+LAQRSA AAKEIK LI DSV++VD G LV+ AG TMG+IVN+V +V IM Sbjct: 398 VVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMG 457 Query: 241 EITQASQEQSTGIGQVNDAITQMEAITQQNAALVEEA 277 EI AS EQS GI Q+ A+ +M+ +TQQNA+LVEE+ Sbjct: 458 EIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEES 494 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 302 bits (774), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 172/260 (66%), Positives = 201/260 (77%), Gaps = 1/260 (0%) Query: 11 MAGRVADYDLTARSVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATG 70 +A R+A DL+ +A D+ LL ++ M +L +GR+R + E I A+REIA+G Sbjct: 232 VANRIAGGDLSV-EIATRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASG 290 Query: 71 NADLSRRTESQASSLEETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNV 130 N DLS RTE QASSLEETASAMEEL STVQ NA+NA QA+QLA SAS +A RGG+VVS V Sbjct: 291 NLDLSSRTEQQASSLEETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRV 350 Query: 131 VQTMDEIKTSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 190 V+TM I SSR+IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLA Sbjct: 351 VETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLA 410 Query: 191 QRSASAAKEIKELISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQS 250 QRSA+AAKEIK LI DSV VDAG LV+EAG TM EIV SVR+V I+ EIT ASQEQ Sbjct: 411 QRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQR 470 Query: 251 TGIGQVNDAITQMEAITQQN 270 +GI +V+ A+TQ++ TQQN Sbjct: 471 SGIEEVSHAVTQLDDATQQN 490 >RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 617 Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 164/252 (65%), Positives = 196/252 (77%) Query: 19 DLTARSVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATGNADLSRRT 78 DLT R A G+DE AQ+ S NA L ++ ++R + ++ A++EIA GNADLS+RT Sbjct: 334 DLTKRLPADGQDEVAQIARSFNAFADKLTAVLQQIRLGSDSVRSAAQEIAAGNADLSQRT 393 Query: 79 ESQASSLEETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTMDEIK 138 E QASSLEETAS+MEELTS V+ NA+NARQA LA +AS +A RGG VV VVQTM I Sbjct: 394 EEQASSLEETASSMEELTSIVKQNADNARQASSLAVNASDVATRGGSVVGQVVQTMGGIN 453 Query: 139 TSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAK 198 SS++I DII VI+ IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAK Sbjct: 454 ESSKKIADIIGVIESIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAK 513 Query: 199 EIKELISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQSTGIGQVND 258 EIK LI DSVD+V G LVD+AG+TM EIV +V++V IM EI+ AS+EQS+GI QVN Sbjct: 514 EIKALIHDSVDRVSNGTALVDQAGVTMAEIVEAVKRVTDIMGEISAASEEQSSGIEQVNQ 573 Query: 259 AITQMEAITQQN 270 A+ QM+ +TQQN Sbjct: 574 AVNQMDQVTQQN 585 >RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 524 Score = 296 bits (758), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 167/274 (60%), Positives = 211/274 (77%), Gaps = 4/274 (1%) Query: 1 VTQPILASVAMAGRVADYDLTAR----SVAQGRDESAQLLGSLNAMTASLGGIVGRVRTS 56 + +P+ ++ + R+A DL R + A RDE+A+L+ ++ +M +SL +VG+VRT Sbjct: 218 LVRPLERAIHVFERMAAGDLATRMDEPTRAGRRDETARLMHAVASMQSSLQKMVGQVRTG 277 Query: 57 IEVIQHASREIATGNADLSRRTESQASSLEETASAMEELTSTVQNNAENARQADQLAGSA 116 + I A+++IA GNADLS+RTE QASSLEETAS+MEELTS V+ NA+NARQA LA +A Sbjct: 278 SDSIASATKQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQASTLAVNA 337 Query: 117 SRLAERGGEVVSNVVQTMDEIKTSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQG 176 S +A +GGEVV VV+TM I SS++I DII VI+GIAFQTNILALNAAVEAARAGEQG Sbjct: 338 SDVAVKGGEVVGRVVETMAGINGSSKKIADIIGVIEGIAFQTNILALNAAVEAARAGEQG 397 Query: 177 RGFAVVASEVRSLAQRSASAAKEIKELISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVA 236 RGFAVVA EVRSLAQRSA AAKEIKELISDSVD+V G +LV EAG + E+V +V++V Sbjct: 398 RGFAVVAGEVRSLAQRSAGAAKEIKELISDSVDRVQNGSKLVAEAGTVIDEVVVAVKRVT 457 Query: 237 GIMSEITQASQEQSTGIGQVNDAITQMEAITQQN 270 IM EI+ AS EQS+GI QVN A+ QM+ +TQQN Sbjct: 458 DIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQN 491 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 293 bits (751), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 164/277 (59%), Positives = 208/277 (75%) Query: 1 VTQPILASVAMAGRVADYDLTARSVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVI 60 +T+PI ++ +A VA +LT +DE +LL +L M +L GIV +VR + I Sbjct: 214 ITRPINHAMHLAEAVAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTI 273 Query: 61 QHASREIATGNADLSRRTESQASSLEETASAMEELTSTVQNNAENARQADQLAGSASRLA 120 AS E+A+GN DLS RTE QASSLEETA+AME+LTSTV+ NA+NA++A +LA +AS +A Sbjct: 274 TRASSEVASGNIDLSSRTEQQASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVA 333 Query: 121 ERGGEVVSNVVQTMDEIKTSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 180 +GG+ V +QTM I TSSR+IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 334 TKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA 393 Query: 181 VVASEVRSLAQRSASAAKEIKELISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMS 240 VVA EVRSLAQRSA+AAKEIK LI DSV V G V+EAG + ++V ++ V I+S Sbjct: 394 VVAGEVRSLAQRSAAAAKEIKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVS 453 Query: 241 EITQASQEQSTGIGQVNDAITQMEAITQQNAALVEEA 277 EI+ +S+EQS GI Q+N+AITQM+ TQ+NA+LVEE+ Sbjct: 454 EISASSREQSDGIEQINEAITQMDKATQENASLVEES 490