BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0022.p (708 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC1349_3 [T] COG0642 Signal transduction histidine kinase Vch Vi... 249 1e-65 mlr3786_1 [T] COG0642 Signal transduction histidine kinase Mlo M... 235 2e-61 mll3725_2 [T] COG0642 Signal transduction histidine kinase Mlo M... 235 3e-61 alr2279_3 [T] COG0642 Signal transduction histidine kinase Nos N... 230 7e-60 alr3761_5 [T] COG0642 Signal transduction histidine kinase Nos N... 229 2e-59 >VC1349_3 [T] COG0642 Signal transduction histidine kinase Vch Vibrio cholerae Length = 260 Score = 249 bits (637), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 169/240 (70%) Query: 54 EKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDTQQAEFAKAIED 113 ++L +AKEAAD +G FL+ MSHEIRTPMNA+LGMA L +T LDT Q ++ I + Sbjct: 1 DELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINE 60 Query: 114 SAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAEVVEASAEALSFKAREKRVRLLAHLDS 173 SA LLGI+ND+LDFSK++ GK+++ ++F+L +V++ +S KA+EK + L +D Sbjct: 61 SAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDP 120 Query: 174 RLPPRLVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQALQVTGDHCRVRFEVRDSGIGM 233 +P L+GDP R+ Q+++NL GNA+KFT GE++L + Q+ +RF V+D+GIG+ Sbjct: 121 HIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 180 Query: 234 DEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVESALGTGSCFWFEL 293 +D L LF F+QAD+S+TRQYGGTGLGLSI K+LVELMGG I V S G GS F F + Sbjct: 181 AQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSV 240 >mlr3786_1 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium loti Length = 478 Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 130/277 (46%), Positives = 172/277 (62%), Gaps = 10/277 (3%) Query: 26 WQKLVLAAIWGIHALTLLR-----LLRENARTAEKLVQAKEAADHAMLTRGAFLSTMSHE 80 W +L + I A + R + R A++AE L +A EAAD A + FL+ MSHE Sbjct: 194 WASGLLFGVLAIVAFWIFRPMEQAIRRAFAQSAESLFKA-EAADRA---KSEFLANMSHE 249 Query: 81 IRTPMNAVLGMAGLLRSTRLDTQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAV 140 IRTPMN VLGMA LL T L +Q F I S +ALL I+ND+LDFSKI+ G++ + Sbjct: 250 IRTPMNGVLGMAELLAKTELTPRQKTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDP 309 Query: 141 VEFDLAEVVEASAEALSFKAREKRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKF 200 F L E VE A +S + EK + L+ +D RLP +VGD GR RQI+ NL+GNA+KF Sbjct: 310 APFRLTEAVEDVATLVSARVAEKNLELIVRVDPRLPAHVVGDAGRFRQIVTNLVGNAVKF 369 Query: 201 THAGEVLLRVQALQVTGDHCRVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTG 260 T G VL+ V + D ++R V D+GIG+ + L+ +F FAQ D S TR++ GTG Sbjct: 370 TEKGHVLIDVGG-ETVNDVVQLRLRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTG 428 Query: 261 LGLSICKRLVELMGGSIGVESALGTGSCFWFELGIPV 297 LGL+I RLV+LM G IGVES +G GS FWF + +PV Sbjct: 429 LGLAIAARLVDLMAGKIGVESEIGRGSVFWFAVPLPV 465 >mll3725_2 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium loti Length = 328 Score = 235 bits (599), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 128/247 (51%), Positives = 167/247 (67%), Gaps = 4/247 (1%) Query: 51 RTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDTQQAEFAKA 110 R AE L +A++ A A + FL+ MSHEIRTPMN VLGMA LL + LD +Q F Sbjct: 68 REAE-LSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTDI 126 Query: 111 IEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAEVVEASAEALSFKAREKRVRLLAH 170 I S +ALL I+ND+LDFSKID G+M + F+LAE +E A +S +A+EK + L+ Sbjct: 127 IVKSGNALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVR 186 Query: 171 LDSRLPPRLVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQALQV-TGDHCRVRFEVRDS 229 ++ RL VGD GRIRQI+ NLLGNA+KFT G VL+ V +V TG R+ V D+ Sbjct: 187 VEPRLESLFVGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTG--TRLTISVTDT 244 Query: 230 GIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVESALGTGSCF 289 GIG+ E+ L+ +F F+Q D+S TR++ GTGLGL+I RLVELMGG+IGVESA G GS F Sbjct: 245 GIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGTIGVESAEGKGSTF 304 Query: 290 WFELGIP 296 WF + +P Sbjct: 305 WFTVTLP 311 >alr2279_3 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 260 Score = 230 bits (587), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 116/246 (47%), Positives = 165/246 (67%), Gaps = 5/246 (2%) Query: 59 AKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDTQQAEFAKAIEDSAHAL 118 AK+ A+ A + + FL+TMSHEIRTPMNA++GM+GLL T L +Q ++ + I +S+H L Sbjct: 1 AKQVAEKANMAKSNFLATMSHEIRTPMNAIIGMSGLLLDTTLKPEQFDYVETIRNSSHTL 60 Query: 119 LGIVNDVLDFSKIDVGKMDIAVVEFDLAEVVEASAEALSFKAREKRVRLLAHLDSRLPPR 178 L I+ND+LDFSKI+ GK+++ FDL VE + + L+ +A K + L+ L+ P Sbjct: 61 LTIINDILDFSKIESGKLELEEQPFDLRLCVEEALDLLAPQAASKGIELMYQLEPDTPTL 120 Query: 179 LVGDPGRIRQILLNLLGNALKFTHAGEVLLRV---QALQVTGDHCRVRFE--VRDSGIGM 233 +VGD RIRQIL NL+ NA+KFT GE+ + + Q + D R F+ V+D+GIG+ Sbjct: 121 VVGDITRIRQILWNLVSNAVKFTKIGEICITIGAKQKIYKQTDPTRYEFQFAVQDTGIGI 180 Query: 234 DEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVESALGTGSCFWFEL 293 + D L RLF PF+Q D+S+TR+YGGTGLGL+I KRL E+MGG + VES GS F+F Sbjct: 181 ERDRLHRLFKPFSQVDASMTRRYGGTGLGLAISKRLSEIMGGKMWVESQSHQGSIFYFTA 240 Query: 294 GIPVTT 299 + V + Sbjct: 241 TLQVNS 246 >alr3761_5 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 245 Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 112/224 (50%), Positives = 156/224 (69%) Query: 70 RGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDTQQAEFAKAIEDSAHALLGIVNDVLDFS 129 + AFL+ MSHEIRTPMNAVLGM GL+ T L+ +Q +F + I S ALL ++N++LD S Sbjct: 2 KSAFLANMSHEIRTPMNAVLGMTGLMLETLLNQEQRDFMETIRISGDALLTLINEILDLS 61 Query: 130 KIDVGKMDIAVVEFDLAEVVEASAEALSFKAREKRVRLLAHLDSRLPPRLVGDPGRIRQI 189 K++ G+M + + F+L+ VE + L+ +A K + + A + +P +L GD R+RQI Sbjct: 62 KLEAGEMALENLNFNLSTCVEEVLDLLAPQAHSKGLEIAALIYRHVPIQLQGDASRLRQI 121 Query: 190 LLNLLGNALKFTHAGEVLLRVQALQVTGDHCRVRFEVRDSGIGMDEDTLRRLFSPFAQAD 249 L+NL+GNA+KFT GEV++RV+ T + F V DSG+G+ + +LF+PF Q D Sbjct: 122 LMNLIGNAIKFTSFGEVVMRVELRSETPTTAIIHFAVTDSGLGITLEDQHKLFTPFTQVD 181 Query: 250 SSVTRQYGGTGLGLSICKRLVELMGGSIGVESALGTGSCFWFEL 293 +S TR+YGGTGLGL+ICK+LV LMGG IGVES LG GS FWFE+ Sbjct: 182 ASTTRKYGGTGLGLAICKQLVTLMGGEIGVESQLGKGSKFWFEI 225